YRC Public Data Repository - Protein Structure Prediction

Protein:	LALBA_CAPHI
Organism:	Capra hircus
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LALBA_CAPHI.

Description	E-value	Query Range	Subject Range
gi\|295774, gi\|75... - gi\|7542833\|gb\|AAF63624.1\|AF249896_1 alpha lactalbumin [Bos taurus], gi\|295774\|emb\|CAA29664.1\| alpha-...	203.0	[0..1]	[142..1]
LALBA_SHEEP - Alpha-lactalbumin OS=Ovis aries GN=LALBA PE=1 SV=2	201.0	[0..1]	[142..1]
LALBA_BOSMU - Alpha-lactalbumin OS=Bos mutus grunniens GN=LALBA PE=2 SV=1	199.0	[0..1]	[142..1]
gi\|167782078 - gi\|167782078\|gb\|ACA00156.1\| alpha-lactalbumin [Bos indicus] LCA_BUBBU, LALBA... - (Q9TSN6) Alpha-lactalbumin precursor (Lactose synthase B protein), Alpha-lactalbumin OS=Bubalus buba...	198.0	[0..1]	[142..1]
LALBA_CANLF - Alpha-lactalbumin OS=Canis lupus familiaris GN=LALBA PE=2 SV=1	195.0	[0..1]	[142..1]
gi\|109096369 - gi\|109096369\|ref\|XP_001102116.1\| PREDICTED: lactalbumin, alpha- [Macaca mulatta]	193.0	[0..1]	[142..1]
gi\|60832429 - gi\|60832429\|gb\|AAX37010.1\| lactalbumin alpha [synthetic construct]	191.0	[0..1]	[142..1]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSFVSLLLV GILFHATQAE QLTKCEVFQK LKDLKDYGGV SLPEWVCTAF HTSGYDTQAI  60
   61 VQNNDSTEYG LFQINNKIWC KDDQNPHSRN ICNISCDKFL DDDLTDDIVC AKKILDKVGI 120
  121 NYWLAHKALC SEKLDQWLCE KL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.045757
Match:	1hmlA
Description:	ALPHA_LACTALBUMIN POSSESSES A DISTINCT ZINC BINDING SITE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits