YRC Public Data Repository - Protein Structure Prediction

Protein:	KDGR_ECOLI
Organism:	Escherichia coli
Length:	263 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KDGR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77995476, gi\|... - gi\|78043361\|ref\|YP_360107.1\| IclR family transcriptional regulator [Carboxydothermus hydrogenoforman...	289.0	[0..13]	[259..10]
gi\|76589242, gi\|... - gi\|76795434\|ref\|ZP_00777807.1\| regulatory proteins, IclR [Thermoanaerobacter ethanolicus ATCC 33223]... gi\|241902590, gi... - gi\|241902590\|ref\|ZP_04787323.1\| transcriptional regulator, IclR family [Thermoanaerobacter brockii s...	281.0	[0..5]	[259..1]
KDGR_DICCH - Pectin degradation repressor protein KdgR OS=Dickeya chrysanthemi GN=kdgR PE=1 SV=2	280.0	[0..1]	[263..43]
gi\|110805380, gi... - gi\|110805380\|ref\|YP_688900.1\| putative regulator [Shigella flexneri 5 str. 8401], gi\|110614928\|gb\|AB...	279.0	[0..1]	[263..1]
gi\|81241365, gi\|... - gi\|82777217\|ref\|YP_403566.1\| putative regulator [Shigella dysenteriae Sd197], gi\|81241365\|gb\|ABB6207...	278.0	[0..1]	[263..1]
gi\|5758045 - gi\|5758045\|gb\|AAD50646.1\|AF135395_1 KdgR [Pectobacterium carotovorum subsp. carotovorum]	277.0	[0..1]	[263..1]
gi\|12515874, gi\|... - gi\|15802241\|ref\|NP_288264.1\| putative regulator [Escherichia coli O157:H7 EDL933], gi\|12515874\|gb\|AA... gi\|25298241 - pir\|\|E85794 probable regulator Z2874 [imported] - Escherichia coli (strain O157:H7, substrain EDL93...	277.0	[0..1]	[263..1]
gi\|83584506, gi\|... - gi\|83584506\|ref\|ZP_00923184.1\| COG1414: Transcriptional regulator [Escherichia coli 101-1], gi\|19444... gi\|15831791, gi\|... - gi\|15831791\|ref\|NP_310564.1\| putative regulator [Escherichia coli O157:H7 str. Sakai], gi\|13362004\|d... gi\|75175656, gi\|... - gi\|75175656\|ref\|ZP_00695862.1\| COG1414: Transcriptional regulator [Shigella boydii BS512], gi\|187730... gi\|75195892, gi\|... - gi\|75195892\|ref\|ZP_00705962.1\| COG1414: Transcriptional regulator [Escherichia coli HS], gi\|15716129... gi\|82543749, gi\|... - gi\|82543749\|ref\|YP_407696.1\| putative regulator [Shigella boydii Sb227], gi\|81245160\|gb\|ABB65868.1\| ... gi\|208739789, gi... - gi\|208819666\|ref\|ZP_03259986.1\| transcriptional regulator KdgR [Escherichia coli O157:H7 str. EC4042... gi\|209159212, gi... - gi\|209397812\|ref\|YP_002270908.1\| transcriptional regulator KdgR [Escherichia coli O157:H7 str. EC411... gi\|217317931, gi... - gi\|217328584\|ref\|ZP_03444665.1\| transcriptional regulator KdgR [Escherichia coli O157:H7 str. TW1458... gi\|124498874, gi... - gi\|124530979\|ref\|ZP_01701435.1\| transcriptional regulator, IclR family [Escherichia coli B], gi\|1244... gi\|242377548, gi... - gi\|251785275\|ref\|YP_002999579.1\| hypothetical protein B21_01786 [Escherichia coli BL21], gi\|24237754... gi\|253773218, gi... - gi\|254288675\|ref\|YP_003054423.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... gi\|254161887, gi... - gi\|254161887\|ref\|YP_003044995.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... gi\|254592851, gi... - gi\|254793451\|ref\|YP_003078288.1\| DNA-binding transcriptional regulatory protein KdgR [Escherichia co... gi\|189371925, gi... - gi\|189371925\|gb\|EDU90341.1\| transcriptional regulator KdgR [Escherichia coli O157:H7 str. EC869], gi... gi\|189375223, gi... - gi\|189375223\|gb\|EDU93639.1\| transcriptional regulator KdgR [Escherichia coli O157:H7 str. EC508], gi... gi\|170019828, gi... - gi\|170019828\|ref\|YP_001724782.1\| IclR family transcriptional regulator [Escherichia coli ATCC 8739],... gi\|170519056, gi... - gi\|170681338\|ref\|YP_001743418.1\| transcriptional regulator KdgR [Escherichia coli SMS-3-5], gi\|17051... gi\|188495045, gi... - gi\|188495045\|ref\|ZP_03002315.1\| transcriptional regulator, IclR family, C-terminal domain [Escherich... gi\|195939728 - gi\|195939728\|ref\|ZP_03085110.1\| IclR family transcriptional regulator [Escherichia coli O157:H7 str.... gi\|208810404, gi... - gi\|208810404\|ref\|ZP_03252280.1\| transcriptional regulator KdgR [Escherichia coli O157:H7 str. EC4206... gi\|208816561, gi... - gi\|208816561\|ref\|ZP_03257681.1\| transcriptional regulator KdgR [Escherichia coli O157:H7 str. EC4045... gi\|168758593, gi... - gi\|189354619\|gb\|EDU73038.1\| transcriptional regulator KdgR [Escherichia coli O157:H7 str. EC4401], g... gi\|15831791, gi\|... - gi\|15831791\|ref\|NP_310564.1\| putative regulator [Escherichia coli O157:H7], gi\|13362004\|dbj\|BAB35960... gi\|168765201, gi... - gi\|189364965\|gb\|EDU83381.1\| transcriptional regulator KdgR [Escherichia coli O157:H7 str. EC4501], g... gi\|189360347, gi... - gi\|189360347\|gb\|EDU78766.1\| transcriptional regulator KdgR [Escherichia coli O157:H7 str. EC4486], g... gi\|168777778, gi... - gi\|187767057\|gb\|EDU30901.1\| transcriptional regulator KdgR [Escherichia coli O157:H7 str. EC4196], g... gi\|209767810, gi... - pir\|\|A98946 probable regulator [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952... gi\|188999464, gi... - gi\|188999464\|gb\|EDU68450.1\| transcriptional regulator KdgR [Escherichia coli O157:H7 str. EC4076], g...	277.0	[0..1]	[263..1]
gi\|74311861, gi\|... - gi\|74311861\|ref\|YP_310280.1\| putative regulator [Shigella sonnei Ss046], gi\|73855338\|gb\|AAZ88045.1\| ... gi\|194430508, gi... - gi\|75208177\|ref\|ZP_00708553.1\| COG1414: Transcriptional regulator [Escherichia coli B171], gi\|194430... gi\|75190856, gi\|... - gi\|75190856\|ref\|ZP_00704123.1\| COG1414: Transcriptional regulator [Escherichia coli E24377A], gi\|157... gi\|209912452, gi... - gi\|209919193\|ref\|YP_002293277.1\| putative transcriptional regulator [Escherichia coli SE11], gi\|2099... gi\|218361169, gi... - gi\|218554401\|ref\|YP_002387314.1\| DNA-binding transcriptional repressor KdgR [Escherichia coli IAI1],...	277.0	[0..1]	[263..1]
gi\|22208834 - gi\|22208834\|emb\|CAD43410.1\| KdgR repressor [Pectobacterium atrosepticum]	276.0	[0..1]	[263..1]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANADLDKQP DSVSSVLKVF GILQALGEER EIGITELSQR VMMSKSTVYR FLQTMKTLGY  60
   61 VAQEGESEKY SLTLKLFELG ARA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	2p5vA
Description:	No description for 2p5vA was found.

Predicted Domain #2

Region A:
Residues: [84-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQNVDLIRSA DIQMRELSRL TKETIHLGAL DEDSIVYIHK IDSMYNLRMY SRIGRRNPLY  60
   61 STAIGKVLLA WRDRDEVKQI LEGVEYKRST ERTITSTEAL LPVLDQVREQ GYGEDNEEQE 120
  121 EGLRCIAVPV FDRFGVVIAG LSISFPTLRF SEERLQEYVA MLHTAARKIS AQMGYHDYPF 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.045757
Match:	1yspA
Description:	Crystal structure of the C-terminal domain of E. coli transcriptional regulator KdgR.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits