YRC Public Data Repository - Protein Structure Prediction

Protein:	K6PF2_ECOLI, K6P...
Organism:	Escherichia coli
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for K6PF2_ECOLI, K6P....

Description	E-value	Query Range	Subject Range
gi\|28203058, gi\|... - gi\|28210620\|ref\|NP_781564.1\| ribokinase [Clostridium tetani E88], gi\|28203058\|gb\|AAO35501.1\| ribokin...	243.0	[0..3]	[306..4]
gi\|20515184, gi\|... - gi\|20806728\|ref\|NP_621899.1\| ribokinase family sugar kinase [Thermoanaerobacter tengcongensis MB4], ... gi\|20806728 - gi\|20806728\|ref\|NP_621899.1\| Sugar kinase, ribokinase family [Thermoanaerobacter tengcongensis MB4] gi\|254478103, gi... - gi\|254478103\|ref\|ZP_05091486.1\| ribokinase [Carboxydibrachium pacificum DSM 12653], gi\|223490092\|ref...	239.0	[0..2]	[306..1]
gi\|242258203, gi... - gi\|242258203\|ref\|ZP_04803029.1\| ribokinase [Thermoanaerobacter sp. X513], gi\|242230274\|gb\|EES32659.1... gi\|241904638, gi... - gi\|241904638\|ref\|ZP_04789317.1\| ribokinase [Thermoanaerobacter brockii subsp. finnii Ako-1], gi\|2418... gi\|167038425, gi... - gi\|76797420\|ref\|ZP_00779739.1\| Ribokinase, bacterial [Thermoanaerobacter ethanolicus ATCC 33223], gi... gi\|167038832, gi... - gi\|167038832\|ref\|YP_001661817.1\| ribokinase [Thermoanaerobacter sp. X514], gi\|166853072\|gb\|ABY91481....	236.0	[0..2]	[306..1]
gi\|52424338, gi\|... - gi\|52424338\|ref\|YP_087475.1\| RbsK protein [Mannheimia succiniciproducens MBEL55E], gi\|52306390\|gb\|AA...	230.0	[0..2]	[308..5]
gi\|106882307, gi... - gi\|119944129\|ref\|YP_941809.1\| ribokinase [Psychromonas ingrahamii 37], gi\|119862733\|gb\|ABM02210.1\| r...	228.0	[0..2]	[307..1]
gi\|7434229 - pir\|\|E72311 ribokinase - Thermotoga maritima (strain MSB8) gi\|15643720, gi\|... - gi\|4981498\|gb\|AAD36039.1\|AE001759_3 ribokinase [Thermotoga maritima MSB8], gi\|15643720\|ref\|NP_228768...	224.0	[0..1]	[307..1]
gi\|91224727, gi\|... - gi\|91224727\|ref\|ZP_01259987.1\| ribokinase [Vibrio alginolyticus 12G01], gi\|91190273\|gb\|EAS76542.1\| r...	224.0	[0..2]	[306..1]
gi\|28809384, gi\|... - gi\|28900938\|ref\|NP_800593.1\| ribokinase [Vibrio parahaemolyticus RIMD 2210633], gi\|28809384\|dbj\|BAC6... gi\|28809384 - gi\|28809384\|dbj\|BAC62426.1\| ribokinase [Vibrio parahaemolyticus RIMD 2210633] gi\|149750024, gi... - gi\|153836675\|ref\|ZP_01989342.1\| ribokinase [Vibrio parahaemolyticus AQ3810], gi\|149750024\|gb\|EDM6076...	223.0	[0..2]	[306..1]
gi\|170717441, gi... - gi\|53728581\|ref\|ZP_00132102.2\| COG0524: Sugar kinases, ribokinase family [Haemophilus somnus 2336], ... gi\|112822935, gi... - gi\|113460892\|ref\|YP_718959.1\| ribokinase [Haemophilus somnus 129PT], gi\|112822935\|gb\|ABI25024.1\| rib...	223.0	[0..5]	[308..3]

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Predicted Domain #1

Region A:
Residues: [1-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRIYTLTLA PSLDSATITP QIYPEGKLRC TAPVFEPGGG GINVARAIAH LGGSATAIFP  60
   61 AGGATGEHLV SLLADENVPV ATVEAKDWTR QNLHVHVEAS GEQYRFVMPG AALNEDEFRQ 120
  121 LEEQVLEIES GAILVISGSL PPGVKLEKLT QLISAAQKQG IRCIVDSSGE ALSAALAIGN 180
  181 IELVKPNQKE LSALVNRELT QPDDVRKAAQ EIVNSGKAKR VVVSLGPQGA LGVDSENCIQ 240
  241 VVPPPVKSQS TVGAGDSMVG AMTLKLAENA SLEEMVRFGV AAGSAATLNQ GTRLCSHDDT 300
  301 QKIYAYLSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.39794
Match:	2abqA
Description:	Crystal structure of fructose-1-phosphate kinase from Bacillus halodurans
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.11518580948187	bayes_pls_golite062009
carbohydrate kinase activity	1.99025603598964	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.69918601153494	bayes_pls_golite062009
transferase activity	1.65599843675995	bayes_pls_golite062009
kinase activity	1.6060752218324	bayes_pls_golite062009
ribokinase activity	0.51718258191684	bayes_pls_golite062009
phosphofructokinase activity	0.14502182066038	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.143446029424335	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: