YRC Public Data Repository - Protein Structure Prediction

Protein:	CE40813
Organism:	Caenorhabditis elegans
Length:	388 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40813.

Description	E-value	Query Range	Subject Range
gi\|157768707 - gi\|157768707\|ref\|XP_001676174.1\| Hypothetical protein CBG04492 [Caenorhabditis briggsae AF16] gi\|187035742, gi... - gi\|39582123\|emb\|CAE60800.1\| Hypothetical protein CBG04492 [Caenorhabditis briggsae], gi\|187035742\|em...	518.0	[0..4]	[381..15]
CE27407 - status:Confirmed UniProt:Q9GUJ2 protein_id:AAG23361.2	375.0	[0..7]	[318..23]

Back

Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFVFSIKCH SCLTYCKTVN GKVDPVNCDC KSPPNEQCSA NACFAKVELF ADESTAIVQK  60
   61 GCISDFPSGQ RGCQYASNMD TIHCFCDQDQ CNTRHKLGSY IPSRLPSVEC CHCTSRHGED 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [121-388]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CDSGCSTNCR GNYCVVDFDG KEQGCGLGYP RLPSFLRVDD YLDYEGDYLC TSASNVMNGC  60
   61 VCTHPSGLCN EFNKTFNYQK KHVIERKHEN LHYCYALMHK GYKPFGQEVF KKSSTCEGHY 120
  121 CFISLTTSEI VLESADFKHN YEDHDEFVGA ARPRFELQAG CVKVNGNDKV QIGCTVETQG 180
  181 NSSEVLAKHC ICDSHLCNFH HLVRGTDDPR PKAAIPGVKQ TTNQLNPVRL YTSNKEIDEN 240
  241 DILSVMNGVR EAQSMTIGAF IWLCIRIF