YRC Public Data Repository - Protein Structure Prediction

Protein:	DEF2_SINAL
Organism:	Sinapis alba
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEF2_SINAL.

Description	E-value	Query Range	Subject Range
gi\|85539365 - gi\|85539365\|emb\|CAJ44307.1\| rapeseed trypsin inhibitor 3 [Brassica napus]	162.0	[0..1]	[97..1]
gi\|45597840, gi\|... - gi\|45597840\|emb\|CAG15190.1\| putative trypsin inhibitor 4 [Arabidopsis thaliana], gi\|45597834\|emb\|CAG...	157.0	[0..3]	[96..1]
gi\|45597905 - gi\|45597905\|emb\|CAG15245.1\| putative trypsin inhibitor I4 [Arabidopsis lyrata subsp. petraea]	154.0	[0..3]	[96..1]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMAKKSVSS FTLIFILVLV IFEVPEIKAQ DSECLKEYGG DVGFPFCAPR IFPTICYTRC  60
   61 RENKGAKGGR CIWGEGTNVK CLCDYCNDSP FDQILRGGI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	1jxcA
Description:	Trypsin/chymotrypsin inhibitor ATT
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits