YRC Public Data Repository - Protein Structure Prediction

Protein:	INTR_ECOLI
Organism:	Escherichia coli
Length:	411 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for INTR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|15831183, gi\|... - gi\|15831183\|ref\|NP_309956.1\| putative transposase [Escherichia coli O157:H7], gi\|13361394\|dbj\|BAB353... gi\|25323730, gi\|... - pir\|\|H85748 probable integrase for prophage CP-933R intR [imported] - Escherichia coli (strain O157:... gi\|217317913, gi... - gi\|217329474\|ref\|ZP_03445554.1\| Rac prophage; integrase [Escherichia coli O157:H7 str. TW14588], gi\|... gi\|12515407, gi\|... - gi\|15801820\|ref\|NP_287838.1\| putative integrase for prophage CP-933R [Escherichia coli O157:H7 EDL93... gi\|189367099, gi... - gi\|189367099\|gb\|EDU85515.1\| Rac prophage; integrase [Escherichia coli O157:H7 str. EC4501], gi\|16876... gi\|15831183, gi\|... - gi\|15831183\|ref\|NP_309956.1\| putative transposase [Escherichia coli O157:H7 str. Sakai], gi\|13361394...	242.0	[0..1]	[411..1]
gi\|117623597, gi... - gi\|117623597\|ref\|YP_852510.1\| Rac prophage; integrase [Escherichia coli APEC O1], gi\|115512721\|gb\|AB...	239.0	[0..1]	[411..1]
gi\|16759873 - gi\|16759873\|ref\|NP_455490.1\| integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi\|25323732, gi\|... - gi\|25323732\|pir\|\|AC0617 integrase [imported] - Salmonella enterica subsp. enterica serovar Typhi (st... gi\|29142354, gi\|... - gi\|29142354\|ref\|NP_805696.1\| integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2],...	239.0	[0..4]	[411..22]
gi\|81245610, gi\|... - gi\|82544199\|ref\|YP_408146.1\| putative transposase [Shigella boydii Sb227], gi\|81245610\|gb\|ABB66318.1...	238.0	[0..1]	[411..1]
gi\|16764365, gi\|... - gi\|16764365\|ref\|NP_459980.1\| integrase [Salmonella typhimurium LT2], gi\|16419518\|gb\|AAL19939.1\| Gifs... gi\|194444835, gi... - gi\|194444835\|ref\|YP_002040207.1\| integrase [Salmonella enterica subsp. enterica serovar Newport str.... gi\|195630891, gi... - gi\|195630891\|gb\|EDX49477.1\| integrase [Salmonella enterica subsp. enterica serovar Newport str. SL31... gi\|169257268 - gi\|169257268\|ref\|YP_001700644.1\| bacteriophage integrase [Phage Gifsy-2]	237.0	[0..4]	[410..6]
gi\|62127166, gi\|... - gi\|62179533\|ref\|YP_215950.1\| Gifsy-2 prophage integrase [Salmonella enterica subsp. enterica serovar...	234.0	[0..4]	[411..6]
gi\|30910915, gi\|... - gi\|49523586\|emb\|CAD88804.1\| putative integrase [Phage BP-4795], gi\|31044226\|ref\|NP_851940.1\| putativ...	229.0	[0..4]	[411..6]
gi\|188492593, gi... - gi\|75513013\|ref\|ZP_00735475.1\| COG0582: Integrase [Escherichia coli 53638], gi\|188492593\|ref\|ZP_0299...	225.0	[0..3]	[411..5]

Back

Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLPTGVEI RGRYIRIWFM FRGKRCRETL KGWEITNSNI KKAGNLRALI VHEINSGEFE  60
   61 YLRRFPQSST GAKMVTTRVI K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [82-411]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFGELCDIWT KIKETELTTN TMKKTKSQLK TLRIIICEST PISHIRYSDI LNYRNELLHG  60
   61 ETLYLDNPRS NKKGRTVRTV DNYIALLCSL LRFAYQSGFI STKPFEGVKK LQRNRIKPDP 120
  121 LSKTEFNALM ESEKGQSQNL WKFAVYSGLR HGELAALAWE DVDLEKGIVN VRRNLTILDM 180
  181 FGPPKTNAGI RTVTLLQPAL EALKEQYKLT GHHRKSEITF YHREYGRTEK QKLHFVFMPR 240
  241 VCNGKQKPYY SVSSLGARWN AAVKRAGIRR RNPYHTRHTF ACWLLTAGAN PAFIASQMGH 300
  301 ETAQMVYEIY GMWIDDMNDE QIAMLNARLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.39794
Match:	1a0pA
Description:	SITE-SPECIFIC RECOMBINASE, XERD
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits