YRC Public Data Repository - Protein Structure Prediction

Protein:	INS_VERMO
Organism:	Verasper moseri
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for INS_VERMO.

Description	E-value	Query Range	Subject Range
INS_LOPPI - (P01341) Insulin precursor INS_LOPAM - Insulin OS=Lophius americanus GN=ins PE=3 SV=1	129.0	[0..1]	[115..1]
INS_ORENI - Insulin OS=Oreochromis niloticus GN=ins PE=1 SV=2	126.0	[0..1]	[115..1]
INS_CHICK - Insulin OS=Gallus gallus GN=INS PE=1 SV=1	121.0	[0..3]	[115..2]
INS_MACFA - Insulin OS=Macaca fascicularis GN=INS PE=3 SV=1	119.0	[0..3]	[115..2]
INS_PONPY - Insulin OS=Pongo pygmaeus GN=INS PE=3 SV=1	119.0	[0..3]	[115..2]
gi\|47221426 - gi\|47221426\|emb\|CAF97344.1\| unnamed protein product [Tetraodon nigroviridis]	119.0	[0..1]	[115..1]
INS - insulin gi\|22901140 - gi\|22901140\|gb\|AAN06935.1\| insulin precursor [Gorilla gorilla] gi\|123992113, gi... - gi\|61361299\|gb\|AAX42026.1\| insulin [synthetic construct], gi\|61361296\|gb\|AAX42025.1\| insulin [synthe... INS_GORGO - Insulin OS=Gorilla gorilla gorilla GN=INS PE=3 SV=1	119.0	[0..3]	[115..2]
gi\|30584395, gi\|... - gi\|60653575\|gb\|AAX29481.1\| insulin [synthetic construct], gi\|60653573\|gb\|AAX29480.1\| insulin [synthe...	119.0	[0..3]	[115..2]
INS_CHLAE - Insulin OS=Chlorocebus aethiops GN=INS PE=1 SV=1	119.0	[0..3]	[115..2]
gi\|109240262 - gi\|109240262\|dbj\|BAE96120.1\| insulin [Seriola dumerili]	118.0	[0..1]	[115..1]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALWLQSVS LLVLMLVSWS GSQAVLPPQH LCGAHLVDAL YLVCGERGFF YTPKRDVDPL  60
   61 LGFLPAKSGG AAAGGENEVA EFAFKDQMEM MVKRGIVEQC CHKPCNIFDL QNYCN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.221849
Match:	1bqtA
Description:	THREE-DIMENSIONAL STRUCTURE OF HUMAN INSULIN-LIKE GROWTH FACTOR-I (IGF-I) DETERMINED BY 1H-NMR AND DISTANCE GEOMETRY, 6 STRUCTURES
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits