YRC Public Data Repository - Protein Structure Prediction

Protein:	INS_ORENI
Organism:	Oreochromis niloticus
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for INS_ORENI.

Description	E-value	Query Range	Subject Range
INS_LOPPI - (P01341) Insulin precursor INS_LOPAM - Insulin OS=Lophius americanus GN=ins PE=3 SV=1	130.0	[0..1]	[113..1]
INS_CHICK - Insulin OS=Gallus gallus GN=INS PE=1 SV=1	125.0	[0..3]	[113..2]
INS_VERMO - Insulin OS=Verasper moseri GN=ins PE=3 SV=1	125.0	[0..1]	[113..1]
gi\|47221426 - gi\|47221426\|emb\|CAF97344.1\| unnamed protein product [Tetraodon nigroviridis]	123.0	[0..1]	[113..1]
INS_CYPCA - Insulin OS=Cyprinus carpio GN=ins PE=1 SV=1	120.0	[0..3]	[113..2]
gi\|13991923 - gi\|13991923\|gb\|AAK51558.1\|AF373021_1 preproinsulin [Catla catla]	119.0	[0..3]	[113..2]
gi\|109240262 - gi\|109240262\|dbj\|BAE96120.1\| insulin [Seriola dumerili]	119.0	[0..1]	[113..1]
gi\|13517219 - gi\|13517219\|gb\|AAK28709.1\| preproinsulin [Catostomus commersoni]	118.0	[0..3]	[113..2]
INS1_RAT - Insulin-1 OS=Rattus norvegicus GN=Ins1 PE=1 SV=1	118.0	[0..3]	[113..2]
INS_CRILO - Insulin OS=Cricetulus longicaudatus GN=INS PE=1 SV=2 gi\|305360, gi\|21... - gi\|305360\|gb\|AAA37089.1\| preproinsulin, gi\|2137094\|pir\|\|I48166 insulin precursor - golden hamster	116.0	[0..3]	[113..2]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALWLQAFS LLVLMMVSWP GSQAVGGPQH LCGSHLVDAL YLVCGDRGFF YNPRRDVDPL  60
   61 LGFLPPKAGG AVVQGGENEV TFKDQMEMMV KRGIVEECCH KPCTIFDLQN YCN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.154902
Match:	1efeA
Description:	Insulin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits