YRC Public Data Repository - Protein Structure Prediction

Protein:	IMM7_ECOLX
Organism:	Escherichia coli
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IMM7_ECOLX.

Description	E-value	Query Range	Subject Range
gi\|93278587, gi\|... - gi\|93278589\|pdb\|1ZNV\|C Chain C, How A His-Metal Finger Endonuclease Cole7 Binds And Cleaves Dna With...	155.0	[0..1]	[87..1]
gi\|281824 - pir\|\|S27394 colicin E7 immunity protein - Escherichia coli plasmid ColE7 gi\|144378 - gi\|144378\|gb\|AAA23071.1\| immunity protein	150.0	[0..1]	[87..1]
gi\|144385 - gi\|144385\|gb\|AAA23076.1\| E9imm peptide gi\|78631 - pir\|\|A32535 colicin E9 immunity protein - Escherichia coli plasmid ColE9-J	145.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELKNSISDY TEAEFVQLLK EIEKENVAAT DDVLDVLLEH FVKITEHPDG TDLIYYPSDN  60
   61 RDDSPEGIVK EIKEWRAANG KPGFKQG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.522879
Match:	1ceiA
Description:	STRUCTURE DETERMINATION OF THE COLICIN E7 IMMUNITY PROTEIN (IMME7) THAT BINDS SPECIFICALLY TO THE DNASE-TYPE COLICIN E7 AND INHIBITS ITS BACTERIOCIDAL ACTIVITY
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits