YRC Public Data Repository - Protein Structure Prediction

Protein:	IMDH_HELPY
Organism:	Helicobacter pylori
Length:	481 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IMDH_HELPY.

Description	E-value	Query Range	Subject Range
gi\|89158560, gi\|... - gi\|89211833\|ref\|ZP_01190168.1\| IMP dehydrogenase [Halothermothrix orenii H 168], gi\|89158560\|gb\|EAR7...	429.0	[0..2]	[479..3]
gi\|222824158, gi... - gi\|57240572\|ref\|ZP_00368521.1\| inosine-5'-monophosphate dehydrogenase [Campylobacter lari RM2100], g...	427.0	[0..1]	[479..1]
gi\|118414319, gi... - gi\|86155778\|ref\|ZP_01073940.1\| inosine-5'-monophosphate dehydrogenase [Campylobacter fetus subsp. fe...	427.0	[0..1]	[479..1]
gi\|32262251, gi\|... - gi\|32266201\|ref\|NP_860233.1\| inositol-5-monophosphate dehydrogenase [Helicobacter hepaticus ATCC 514...	426.0	[0..1]	[481..1]
gi\|154175518, gi... - gi\|154175518\|ref\|YP_001407770.1\| inositol-5-monophosphate dehydrogenase [Campylobacter curvus 525.92...	425.0	[0..1]	[479..1]
gi\|157415319, gi... - gi\|157415319\|ref\|YP_001482575.1\| inositol-5-monophosphate dehydrogenase [Campylobacter jejuni subsp.... gi\|88596049, gi\|... - gi\|88596049\|ref\|ZP_01099286.1\| inosine-5'-monophosphate dehydrogenase [Campylobacter jejuni subsp. j... gi\|85843900, gi\|... - gi\|86153015\|ref\|ZP_01071220.1\| inosine-5'-monophosphate dehydrogenase [Campylobacter jejuni subsp. j...	425.0	[0..1]	[479..1]
gi\|166853413, gi... - gi\|167039173\|ref\|YP_001662158.1\| response regulator receiver protein [Thermoanaerobacter sp. X514], ... gi\|167038115, gi... - gi\|76796702\|ref\|ZP_00779057.1\| IMP dehydrogenase [Thermoanaerobacter ethanolicus ATCC 33223], gi\|765... gi\|241902681, gi... - gi\|241902681\|ref\|ZP_04787413.1\| inosine-5'-monophosphate dehydrogenase [Thermoanaerobacter brockii s...	425.0	[0..2]	[479..4]
gi\|57237943, gi\|... - gi\|57237943\|ref\|YP_179191.1\| inositol-5-monophosphate dehydrogenase [Campylobacter jejuni RM1221], g...	424.0	[0..1]	[479..1]
gi\|121613583, gi... - gi\|87305790\|ref\|ZP_01087943.1\| inosine-5'-monophosphate dehydrogenase [Campylobacter jejuni subsp. j... gi\|86151096, gi\|... - gi\|86151096\|ref\|ZP_01069312.1\| inosine-5'-monophosphate dehydrogenase [Campylobacter jejuni subsp. j... gi\|85839048, gi\|... - gi\|86150453\|ref\|ZP_01068678.1\| inosine-5'-monophosphate dehydrogenase [Campylobacter jejuni subsp. j... gi\|11374746 - pir\|\|G81308 IMP dehydrogenase (EC 1.1.1.205) Cj1058c [similarity] - Campylobacter jejuni (strain NCT... gi\|6968494, gi\|1... - gi\|6968494\|emb\|CAB73314.1\| inosine-5'-monophosphate dehydrogenase [Campylobacter jejuni subsp. jejun...	424.0	[0..1]	[479..1]

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Predicted Domain #1

Region A:
Residues: [1-481]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRILQRALTF EDVLMVPRKS SVLPKDVSLK SRLTKNIRLN IPFISAAMDT VTEHKTAIAM  60
   61 ARLGGIGIVH KNMDIQTQVK EITKVKKSES GVINDPIFIH AHRTLADAKV ITDNYKISGV 120
  121 PVVDDKGLLI GILTNRDVRF ETDLSKKVGD VMTKMPLVTA HVGISLDEAS DLMHKHKIEK 180
  181 LPIVDKDNVL KGLITIKDIQ KRIEYPEANK DDFGRLRVGA AIGVGQLDRA EMLVKAGVDA 240
  241 LVLDSAHGHS ANILHTLEEI KKSLVVDVIV GNVVTKEATS DLISAGADAI KVGIGPGSIC 300
  301 TTRIVAGVGM PQVSAIDNCV EVASKFDIPV IADGGIRYSG DVAKALALGA SSVMIGSLLA 360
  361 GTEESPGDFM IYQGRQYKSY RGMGSIGAMT KGSSDRYFQE GVASEKLVPE GIEGRVPYRG 420
  421 KVSDMIFQLV GGVRSSMGYQ GAKNILELYQ NAEFVEITSA GLKESHVHGV DITKEAPNYY 480
  481 G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	116.0
Match:	1vrdA
Description:	Crystal structure of Inosine-5'-monophosphate dehydrogenase (TM1347) from THERMOTOGA MARITIMA at 2.18 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits