YRC Public Data Repository - Protein Structure Prediction

Protein:	TIM9_MESCR
Organism:	Mesembryanthemum crystallinum
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM9_MESCR.

Description	E-value	Query Range	Subject Range
gi\|50766075 - gi\|50766075\|ref\|XP_422986.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	99.0	[0..6]	[91..115]
gi\|73955150 - gi\|73955150\|ref\|XP_854099.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	98.0	[0..9]	[91..166]
TIM9_ASPFU - Mitochondrial import inner membrane translocase subunit tim9 OS=Aspergillus fumigatus GN=tim9 PE=3 S... TIM9_ASPFU - Mitochondrial import inner membrane translocase subunit tim9 OS=Neosartorya fumigata (strain ATCC MY...	97.0	[0..9]	[91..1]
TIM9_ZYGBA - Mitochondrial import inner membrane translocase subunit Tim9 OS=Zygosaccharomyces bailii GN=TIM9 PE=...	96.0	[0..9]	[91..1]
IM09_EMENI, TIM9... - Mitochondrial import inner membrane translocase subunit tim9 OS=Emericella nidulans GN=tim9 PE=3 SV=... TIM9_EMENI - Mitochondrial import inner membrane translocase subunit tim9 OS=Emericella nidulans (strain FGSC A4 ...	95.0	[0..9]	[92..1]
TIM9_ORYSA, IM09... - (Q9XGX7) Mitochondrial import inner membrane translocase subunit Tim9, (Q9XGX7) Mitochondrial import...	95.0	[0..1]	[93..1]
gi\|149390691 - gi\|149390691\|gb\|ABR25363.1\| mitochondrial import inner membrane translocase subunit tim9 [Oryza sati... TIM9_ORYSJ - Mitochondrial import inner membrane translocase subunit Tim9 OS=Oryza sativa subsp. japonica GN=TIM9... TIM9_ORYSA - Mitochondrial import inner membrane translocase subunit Tim9 - Oryza sativa (Rice)	94.0	[0..1]	[93..1]
TIM9_CANGA - Mitochondrial import inner membrane translocase subunit TIM9 OS=Candida glabrata GN=TIM9 PE=3 SV=1 TIM9_CANGA - Mitochondrial import inner membrane translocase subunit TIM9 OS=Candida glabrata (strain ATCC 2001 /...	94.0	[0..9]	[91..1]
gi\|67901324, gi\|... - gi\|67901324\|ref\|XP_680918.1\| IM09_EMENI Mitochondrial import inner membrane translocase subunit TIM9... TIM9_EMENI - Mitochondrial import inner membrane translocase subunit tim9 OS=Emericella nidulans GN=tim9 PE=3 SV=...	93.0	[0..9]	[92..1]
gi\|21617942 - gi\|21617942\|gb\|AAM66992.1\| mitochondrial import inner membrane translocase subunit Tim9 [Arabidopsis...	92.0	[0..1]	[93..1]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKNMLGDLD NLPEEDKLKM ASMIEQLQIR DSLRMYNNLV ERCFTDCVDS FRRKTLDKQE  60
   61 ETCVKRCAEK FLKHSMRVGL RFAELNQGAA TTD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.0
Match:	2bskB
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits