YRC Public Data Repository - Protein Structure Prediction

Protein:	IL8_FELCA
Organism:	Felis catus
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IL8_FELCA.

Description	E-value	Query Range	Subject Range
gi\|1082968 - pir\|\|A53096 interleukin-8 precursor - pig IL8_PIG - Interleukin-8 OS=Sus scrofa GN=CXCL8 PE=1 SV=1	112.0	[0..1]	[100..1]
IL8_RABIT - Interleukin-8 OS=Oryctolagus cuniculus GN=CXCL8 PE=1 SV=2	109.0	[0..1]	[101..1]
gi\|55741690 - ref\|NP_001003200.1\| interleukin 8 [Canis familiaris] IL8_CANLF - Interleukin-8 OS=Canis lupus familiaris GN=CXCL8 PE=3 SV=1	108.0	[0..1]	[99..1]
gi\|17907787 - gi\|17907787\|dbj\|BAB79448.1\| interleukin-8 [Triakis scyllium]	102.0	[0..1]	[101..1]
gi\|28894125 - gi\|28894125\|gb\|AAO52735.1\| monocyte chemoattractant protein-3 [Macaca nemestrina]	101.0	[0..2]	[100..10]
gi\|45384324, gi\|... - gi\|9280593\|gb\|AAF86485.1\| CXC chemokine K60 [Gallus gallus], gi\|45384324\|ref\|NP_990349.1\| interleuki...	101.0	[0..1]	[100..1]
CCL4_RAT - C-C motif chemokine 4 OS=Rattus norvegicus GN=Ccl4 PE=3 SV=1	101.0	[0..3]	[95..1]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKLVVALL AAFMLSAALC EAAVLSRISS ELRCQCIKTH STPFNPKLIK ELTVIDSGPH  60
   61 CENSEIIVKL VNGKEVCLDP KQKWVQKVVE IFLKKAEKQN A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.30103
Match:	1iklA
Description:	NMR STUDY OF MONOMERIC HUMAN INTERLEUKIN-8 (MINIMIZED AVERAGE STRUCTURE)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits