YRC Public Data Repository - Protein Structure Prediction

Protein:	IHFB_RHIME
Organism:	Sinorhizobium meliloti
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IHFB_RHIME.

Description	E-value	Query Range	Subject Range
IHFB_ALKEH - Integration host factor subunit beta OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 ...	132.0	[0..1]	[97..1]
IHFB_HAHCH - Integration host factor subunit beta OS=Hahella chejuensis (strain KCTC 2396) GN=ihfB PE=3 SV=1	132.0	[0..1]	[96..1]
IHFB_HALHL - Integration host factor subunit beta OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=ihfB PE=3...	131.0	[0..1]	[98..1]
IHFB_RHORT - Integration host factor subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 4...	131.0	[0..1]	[103..1]
IHFB_SACD2 - Integration host factor subunit beta OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 170...	130.0	[0..1]	[98..1]
gi\|114538317, gi... - gi\|114706456\|ref\|ZP_01439358.1\| integration host factor beta subunit [Fulvimarina pelagi HTCC2506], ...	129.0	[0..1]	[93..1]
gi\|76882033, gi\|... - gi\|77163719\|ref\|YP_342244.1\| integration host factor, beta subunit [Nitrosococcus oceani ATCC 19707]...	129.0	[0..1]	[95..18]
IHFB_METCA - Integration host factor subunit beta OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / ... IHFB_METCA - Integration host factor subunit beta OS=Methylococcus capsulatus GN=ihfB PE=3 SV=1	128.0	[0..1]	[92..1]
gi\|110834605, gi... - gi\|110834605\|ref\|YP_693464.1\| integration host factor beta-subunit [Alcanivorax borkumensis SK2], gi...	128.0	[0..1]	[103..3]
IHFB_MARMM - Integration host factor subunit beta OS=Maricaulis maris (strain MCS10) GN=ihfB PE=3 SV=1	128.0	[0..1]	[99..1]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKSELVQIV AARNPHLYHR DVENIVNAVL DEITDALAAG NRVELRGFGA FSVKNRPSRS  60
   61 GRNPRTGDSV FVEEKWVPFF KTGKELRERL NPGMNDNNNG EDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	1hueA
Description:	HU protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits