YRC Public Data Repository - Protein Structure Prediction

Protein:	IBPB_ECOLI
Organism:	Escherichia coli
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IBPB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110635080, gi... - gi\|69276655\|ref\|ZP_00612249.1\| Heat shock protein Hsp20 [Mesorhizobium sp. BNC1], gi\|68192561\|gb\|EAN...	158.0	[0..1]	[139..15]
gi\|27382851, gi\|... - gi\|27382851\|ref\|NP_774380.1\| small heat shock protein [Bradyrhizobium japonicum USDA 110], gi\|273560...	154.0	[0..1]	[142..6]
gi\|89361080, gi\|... - gi\|89361080\|ref\|ZP_01198896.1\| small heat shock protein HspD [Xanthobacter autotrophicus Py2], gi\|89...	154.0	[0..1]	[142..1]
gi\|74422003, gi\|... - gi\|75677133\|ref\|YP_319554.1\| heat shock protein Hsp20 [Nitrobacter winogradskyi Nb-255], gi\|74422003...	154.0	[0..1]	[139..1]
gi\|14023412, gi\|... - gi\|14023412\|dbj\|BAB50018.1\| small heat shock protein [Mesorhizobium loti MAFF303099], gi\|13472665\|re...	154.0	[0..1]	[140..1]
gi\|78514481, gi\|... - gi\|78697663\|ref\|ZP_00862169.1\| small heat shock protein [Bradyrhizobium sp. BTAi1], gi\|78514481\|gb\|E...	153.0	[0..1]	[136..1]
gi\|59710620, gi\|... - gi\|59710620\|ref\|YP_203396.1\| heat shock chaperone [Vibrio fischeri ES114], gi\|59478721\|gb\|AAW84508.1... gi\|197334199, gi... - gi\|197334199\|ref\|YP_002154785.1\| small heat shock protein [Vibrio fischeri MJ11], gi\|197315689\|gb\|AC...	153.0	[0..1]	[136..1]
gi\|27364429, gi\|... - gi\|27364429\|ref\|NP_759957.1\| 16 kDa heat shock protein A [Vibrio vulnificus CMCP6], gi\|27360548\|gb\|A...	153.0	[0..1]	[142..1]
gi\|37678199, gi\|... - gi\|37678199\|ref\|NP_932808.1\| 16 kDa heat shock protein A [Vibrio vulnificus YJ016], gi\|37196938\|dbj\|...	152.0	[0..1]	[142..1]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNFDLSPLM RQWIGFDKLA NALQNAGESQ SFPPYNIEKS DDNHYRITLA LAGFRQEDLE  60
   61 IQLEGTRLSV KGTPEQPKEE KKWLHQGLMN QPFSLSFTLA ENMEVSGATF VNGLLHIDLI 120
  121 RNEPEPIAAQ RIAISERPAL NS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.154902
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits