YRC Public Data Repository - Protein Structure Prediction

Protein:	ATIF_CYBJA
Organism:	Cyberlindnera jadinii
Length:	63 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATIF_CYBJA.

Description	E-value	Query Range	Subject Range
STF1_YEAST - ATPase-stabilizing factor 9 kDa, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28... gi\|190405133 - gi\|190405133\|gb\|EDV08400.1\| ATPase-stabilizing factor 9 kDa, mitochondrial precursor [Saccharomyces ... STF1 - Protein involved in regulation of the mitochondrial F1F0-ATP synthase; Stf1p and Stf2p may act as st... gi\|151941872 - gi\|151941872\|gb\|EDN60228.1\| stabilizing factor [Saccharomyces cerevisiae YJM789]	85.0	[0..1]	[63..24]
gi\|90303881, gi\|... - gi\|90303881\|gb\|EAS33512.1\| predicted protein [Coccidioides immitis RS], gi\|119188977\|ref\|XP_00124509...	83.0	[0..2]	[63..30]
gi\|83772731 - gi\|83772731\|dbj\|BAE62859.1\| unnamed protein product [Aspergillus oryzae] gi\|169779055 - gi\|169779055\|ref\|XP_001823992.1\| hypothetical protein [Aspergillus oryzae RIB40]	81.0	[0..1]	[63..29]
gi\|49644466, gi\|... - gi\|50310621\|ref\|XP_455330.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644466\|emb\|CAG9803... gi\|49644466 - gi\|49644466\|emb\|CAG98038.1\| KLLA0F05511p [Kluyveromyces lactis]	79.0	[0..1]	[63..27]
gi\|115442752, gi... - gi\|115442752\|ref\|XP_001218183.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	79.0	[0..1]	[63..30]
gi\|116181650, gi... - gi\|88185750\|gb\|EAQ93218.1\| predicted protein [Chaetomium globosum CBS 148.51], gi\|116181650\|ref\|XP_0...	78.0	[0..1]	[63..27]
gi\|50291103, gi\|... - gi\|50291103\|ref\|XP_447984.1\| unnamed protein product [Candida glabrata], gi\|49527295\|emb\|CAG60935.1\|... gi\|49527295 - gi\|49527295\|emb\|CAG60935.1\| unnamed protein product [Candida glabrata]	75.0	[0..4]	[63..33]
gi\|111060223, gi... - gi\|169616916\|ref\|XP_001801873.1\| hypothetical protein SNOG_11635 [Phaeosphaeria nodorum SN15], gi\|11...	75.0	[0..1]	[63..27]
gi\|71012538, gi\|... - gi\|71012538\|ref\|XP_758508.1\| hypothetical protein UM02361.1 [Ustilago maydis 521], ref\|XP_399976.1\| ...	74.0	[0..1]	[63..28]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAGATGATRQ DGSTDAFEKR EKAQEDLYIR QHEKEQLEAL KESLKKQKKS LDDLEBKIDD  60
   61 LTK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.39
Match:	1gmjA
Description:	F1 ATPase inhibitor, IF1, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits