YRC Public Data Repository - Protein Structure Prediction

Protein:	HYPD_ECOLI
Organism:	Escherichia coli
Length:	373 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HYPD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|17130041, gi\|... - gi\|17228191\|ref\|NP_484739.1\| hydrogenase expression/formation protein [Nostoc sp. PCC 7120], gi\|1713... gi\|25313788 - pir\|\|AF1893 hydrogenase expression/formation protein [imported] - Nostoc sp. (strain PCC 7120)	657.0	[0..1]	[372..1]
gi\|113474625, gi... - gi\|113474625\|ref\|YP_720686.1\| hydrogenase expression/formation protein HypD [Trichodesmium erythraeu...	656.0	[0..1]	[368..1]
gi\|72537498 - gi\|72537498\|gb\|AAZ73675.1\| HypD [Lyngbya majuscula CCAP 1446/4]	655.0	[0..1]	[373..1]
gi\|75910800, gi\|... - gi\|75910800\|ref\|YP_325096.1\| hydrogenase formation HypD protein [Anabaena variabilis ATCC 29413], gi...	654.0	[0..1]	[372..1]
gi\|186680889, gi... - gi\|23130552\|ref\|ZP_00112365.1\| COG0409: Hydrogenase maturation factor [Nostoc punctiforme PCC 73102]...	653.0	[0..1]	[373..21]
gi\|12232076 - gi\|12232076\|gb\|AAG49378.1\|AF325724_1 HypD-like protein [Nostoc punctiforme] gi\|12232076 - gi\|12232076\|gb\|AAG49378.1\|AF325724_1 HypD-like protein [Nostoc punctiforme]	650.0	[0..1]	[373..1]
gi\|78694571, gi\|... - gi\|78694571\|ref\|ZP_00859084.1\| Hydrogenase formation HypD protein [Bradyrhizobium sp. BTAi1], gi\|785...	638.0	[0..1]	[372..1]
HYD2_BRAJA, HYPD... - Hydrogenase expression/formation protein hypD2 OS=Bradyrhizobium japonicum GN=hypD2 PE=3 SV=2, (P319... HYPD2_BRADU - Hydrogenase expression/formation protein hypD2 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / ...	637.0	[0..1]	[372..1]
gi\|98152893, gi\|... - gi\|98152893\|ref\|YP_611142.1\| hydrogenase expression/formation protein HypD [Sphingopyxis alaskensis ...	635.0	[0..1]	[371..1]
gi\|154160214, gi... - gi\|89362419\|ref\|ZP_01200227.1\| Hydrogenase formation HypD protein [Xanthobacter autotrophicus Py2], ...	633.0	[0..1]	[373..1]

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Predicted Domain #1

Region A:
Residues: [1-373]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFVDEYRAP EQVMQLIEHL RERASHLSYT AERPLRIMEV CGGHTHAIFK FGLDQLLPEN  60
   61 VEFIHGPGCP VCVLPMGRID TCVEIASHPE VIFCTFGDAM RVPGKQGSLL QAKARGADVR 120
  121 IVYSPMDALK LAQENPTRKV VFFGLGFETT MPTTAITLQQ AKARDVQNFY FFCQHITLIP 180
  181 TLRSLLEQPD NGIDAFLAPG HVSMVIGTDA YNFIASDFHR PLVVAGFEPL DLLQGVVMLV 240
  241 QQKIAAHSKV ENQYRRVVPD AGNLLAQQAI ADVFCVNGDS EWRGLGVIES SGVHLTPDYQ 300
  301 RFDAEAHFRP APQQVCDDPR ARCGEVLTGK CKPHQCPLFG NTCNPQTAFG ALMVSSEGAC 360
  361 AAWYQYRQQE SEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	144.0
Match:	2z1dA
Description:	No description for 2z1dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits