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View Structure Prediction Details

Protein: HYFD_ECOLI
Organism: Escherichia coli
Length: 479 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HYFD_ECOLI.

Description E-value Query
Range
Subject
Range
gi|5817414 - gi|5817414|gb|AAD52750.1|AF123692_1 NADH dehydrogenase [Tetranema mexicanum]
354.0 [0..2] [462..4]
gi|2605771, gi|7... - pir||T12227 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Retzia capensis chloroplast (fra...
352.0 [0..1] [462..11]
gi|49523517 - gi|49523517|emb|CAE85004.1| NADH dehydrogenase [Ixianthes retzioides]
351.0 [0..1] [462..2]
gi|62899393 - gi|62899393|gb|AAY18626.1| NADH dehydrogenase subunit F [Synapsis ilicifolia]
351.0 [0..1] [462..3]
gi|81158530 - gi|81158530|gb|ABB55556.1| NADH dehydrogenase subunit F [Distictella elongata]
350.0 [0..1] [462..3]
gi|6684547 - gi|6684547|gb|AAF23620.1| NADH dehydrogenase [Halleria lucida]
350.0 [0..1] [462..3]
gi|62899399 - gi|62899399|gb|AAY18629.1| NADH dehydrogenase subunit F [Thomandersia laurifolia]
349.0 [0..1] [462..3]
gi|6689014 - gi|6689014|emb|CAB65355.1| NADH dehydrogenase subunit F [Proboscidea louisianica]
349.0 [0..1] [462..8]
gi|81158532 - gi|81158532|gb|ABB55557.1| NADH dehydrogenase subunit F [Distictella magnoliifolia]
349.0 [0..1] [462..3]

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Predicted Domain #1
Region A:
Residues: [1-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLALTTLL LPFIGALVVS FSPQRRAAEW GVLFAALTTL CMLSLISAFY QADKVAVTLT  60
   61 LVNVGDVALF GLVIDRVSTL ILFVVVFLGL LVTIYSTGYL TDKNREHPHN GTNRYYAFLL 120
  121 VFIGAMAGLV LSSTLLGQLL FFEITGGCSW ALISYYQSDK AQRSALKALL ITHIGSLGLY 180
  181 LAAATLFLQT GTFALSAMSE LHGDARYLVY GGILFAAWGK SAQLPMQAWL PDAMEAPTPI 240
  241 SAYLHAASMV KVGVYIFARA IIDGGNIPHV IGGVGMVMAL VTILYGFLMY LPQQDMKRL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [300-479]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAWSTITQLG WMFFGLSLSI FGSRLALEGS IAYIVNHAFA KSLFFLVAGA LSYSCGTRLL  60
   61 PRLRGVLHTL PLPGVGFCVA ALAITGVPPF NGFFSKFPLF AAGFALSVEY WILLPAMILL 120
  121 MIESVASFAW FIRWFGRVVP GKPSEAVADA APLPGSMRLV LIVLIVMSLI SSVIAATWLQ 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle