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View Structure Prediction Details

Protein: HYFB_ECOLI
Organism: Escherichia coli
Length: 672 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HYFB_ECOLI.

Description E-value Query
Range
Subject
Range
gi|24935014 - gi|24935014|gb|AAN64403.1| NADH dehydrogenase subunit F [Leontice leontopetalum subsp. ewersmannii]
386.0 [0..4] [662..9]
gi|24935010 - gi|24935010|gb|AAN64401.1| NADH dehydrogenase subunit F [Achlys triphylla]
384.0 [0..4] [662..9]
gi|24935016 - gi|24935016|gb|AAN64404.1| NADH dehydrogenase subunit F [Gymnospermium microrrhynchum]
381.0 [0..4] [662..9]
gi|225253 - gi|225253|prf||1211235CM NADH dehydrogenase 5-like ORF 710
380.0 [0..3] [672..8]
gi|7520577, gi|3... - pir||T14232 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Polypremum procumbens chloroplas...
368.0 [0..3] [668..8]
gi|22796298 - gi|22796298|emb|CAD23071.1| NADH dehydrogenase subunit F [Grevea sp. Thulin et al. s.n.]
366.0 [0..3] [670..8]
NU5C_SOLTU - NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Solanum tuberosum GN=ndhF PE=3 SV=1
362.0 [0..3] [672..8]
NU5C_SOLBU - NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Solanum bulbocastanum GN=ndhF PE=3 SV=1
360.0 [0..3] [672..8]
gi|41582207 - gi|41582207|gb|AAS07854.1| NADH dehydrogenase subunit F [Villanova achillaeoides]
360.0 [0..3] [669..8]
gi|41582055 - gi|41582055|gb|AAS07781.1| NADH dehydrogenase subunit F [Dimeresia howellii]
359.0 [0..3] [669..8]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDALQLLTWS LILYLFASLA SLFLLGLDRL AIKLSGITSL VGGVIGIISG ITQLHAGVTL  60
   61 VARFAPPFEF ADLTLRMDSL SAFMVLVISL LVVVCSLYSL TYMREYEGK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [110-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAAAMGFFMN IFIASMVALL VMDNAFWFIV LFEMMSLSSW FLVIARQDKT SINAGMLYFF  60
   61 IAHAGSVLIM IAFLLMGRES GSLDFASFRT LSLSPGLASA VFLLAFFGFG AKAGMMPLHS 120
  121 WLPRAHPAAP SHASALMSGV MVKIGIFGIL KVAMDLLAQT GLPLWWGILV MAIGAISALL 180
  181 GVLYALAEQD IKRLLAWSTV ENVGIILLAV GVAMVGLSLH 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [330-467]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPLLTVVGLL GALFHLLNHA LFKGLLFLGA GAIISRLHTH DMEKMGALAK RMPWTAAACL  60
   61 IGCLAISAIP PLNGFISEWY TWQSLFSLSR VEAVALQLAG PIAMVMLAVT GGLAVMCFVK 120
  121 MYGITFCGAP RSTHAEEA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [468-672]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEVPNTMIVA MLLLAALCVL IALSASWLAP KIMHIAHAFT NTPPATVASG IALVPGTFHT  60
   61 QVTPSLLLLL LLAMPLLPGL YWLWCRSRRA AFRRTGDAWA CGYGWENAMA PSGNGVMQPL 120
  121 RVVFSALFRL RQQLDPTLRL NKGLAHVTAR AQSTEPFWDE RVIRPIVSAT QRLAKEIQHL 180
  181 QSGDFRLYCL YVVAALVVLL IAIAV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle