YRC Public Data Repository - Protein Structure Prediction

Protein:	HYAE_ECOLI
Organism:	Escherichia coli
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HYAE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|25067747 - gi\|25067747\|gb\|AAN65341.1\| thioredoxin/transketolase fusion protein [synthetic construct]	124.0	[0..8]	[125..2]
gi\|160872103, gi... - gi\|94494048\|ref\|ZP_01301251.1\| hypothetical protein Rgryl_01000578 [Rickettsiella grylli], gi\|160872...	124.0	[0..3]	[131..10]
gi\|76812139, gi\|... - gi\|76812139\|ref\|YP_333769.1\| thioredoxin 1 [Burkholderia pseudomallei 1710b], gi\|76581592\|gb\|ABA5106...	123.0	[0..5]	[124..37]
gi\|95928472, gi\|... - gi\|95928472\|ref\|ZP_01311219.1\| thioredoxin [Desulfuromonas acetoxidans DSM 684], gi\|95135262\|gb\|EAT1...	123.0	[0..1]	[124..1]
gi\|575449 - gi\|575449\|gb\|AAA67270.1\| Derived from E. coli thioredoxin gene; normal translation termination codon...	123.0	[0..8]	[129..2]
gi\|110617077, gi... - gi\|110807529\|ref\|YP_691049.1\| thioredoxin [Shigella flexneri 5 str. 8401], gi\|110617077\|gb\|ABF05744.... gi\|68304124\|gb\|A... - TrxA [Escherichia coli] gi\|110644108, gi... - gi\|110644108\|ref\|YP_671838.1\| thioredoxin [Escherichia coli 536], gi\|110345700\|gb\|ABG71937.1\| thiore... gi\|68304124 - gi\|68304124\|gb\|AAY89720.1\| TrxA [Escherichia coli] tr\|A0A0G3HR77\|A0... - Thioredoxin 1 protein OS=Escherichia coli (strain K12) GN=trxA PE=4 SV=1 gi\|26250519, gi\|... - gi\|26250519\|ref\|NP_756559.1\| thioredoxin [Escherichia coli CFT073], gi\|26110949\|gb\|AAN83133.1\|AE0167... gi\|91213301, gi\|... - gi\|91213301\|ref\|YP_543287.1\| thioredoxin [Escherichia coli UTI89], gi\|91074875\|gb\|ABE09756.1\| thiore... gi\|24115074, gi\|... - ref\|NP_709584.1\| thioredoxin 1 [Shigella flexneri 2a str. 301], gb\|AAN45291.1\| thioredoxin 1 [Shige...	122.0	[0..8]	[125..37]
gi\|78167025, gi\|... - gi\|78187123\|ref\|YP_375166.1\| thioredoxin [Pelodictyon luteolum DSM 273], gi\|78167025\|gb\|ABB24123.1\| ...	122.0	[0..1]	[125..7]
gi\|32029610, gi\|... - gi\|32029610\|ref\|ZP_00132604.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Haemophilus somn... gi\|113461487, gi... - gi\|53692484\|ref\|ZP_00122715.2\| COG0526: Thiol-disulfide isomerase and thioredoxins [Haemophilus somn...	122.0	[0..2]	[122..7]
TRXM_PEA - Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1	122.0	[0..10]	[124..68]
gi\|72002380, gi\|... - gi\|72382530\|ref\|YP_291885.1\| thioredoxin [Prochlorococcus marinus str. NATL2A], gi\|72002380\|gb\|AAZ58... gi\|124026231, gi... - gi\|124026231\|ref\|YP_001015347.1\| thioredoxin [Prochlorococcus marinus str. NATL1A], gi\|123961299\|gb\|...	121.0	[0..1]	[124..1]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNDTPFDAL WQRMLARGWT PVSESRLDDW LTQAPDGVVL LSSDPKRTPE VSDNPVMIGE  60
   61 LLREFPDYTW QVAIADLEQS EAIGDRFGVF RFPATLVFTG GNYRGVLNGI HPWAELINLM 120
  121 RGLVEPQQER AS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.30103
Match:	2hfdA
Description:	No description for 2hfdA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.142133664747919	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: