YRC Public Data Repository - Protein Structure Prediction

Protein:	HXB5_CHICK
Organism:	Gallus gallus
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HXB5_CHICK.

Description	E-value	Query Range	Subject Range
gi\|83016948, gi\|... - gi\|83016948\|dbj\|BAE53475.1\| hoxB5a [Oryzias latipes], gi\|74267539\|dbj\|BAE44268.1\| hoxB5a [Oryzias la...	126.0	[0..1]	[80..229]
gi\|47216999 - gi\|47216999\|emb\|CAG01627.1\| unnamed protein product [Tetraodon nigroviridis]	126.0	[0..1]	[82..236]
HXB5A_TAKRU - Homeobox protein Hox-B5a OS=Takifugu rubripes GN=hoxb5a PE=3 SV=1	126.0	[0..1]	[82..238]
gi\|49457548 - gi\|49457548\|emb\|CAG47073.1\| HOXA5 [Homo sapiens]	123.0	[0..1]	[82..189]
gi\|149033363 - gi\|149033363\|gb\|EDL88164.1\| rCG52336 [Rattus norvegicus] HXA5_MOUSE - Homeobox protein Hox-A5 OS=Mus musculus GN=Hoxa5 PE=1 SV=1	123.0	[0..1]	[82..189]
gi\|73976525 - gi\|73976525\|ref\|XP_539487.2\| PREDICTED: similar to Homeobox protein Hox-A5 (Hox-1.3) (M2) [Canis fam... HXA5_BOVIN - Homeobox protein Hox-A5 OS=Bos taurus GN=HOXA5 PE=2 SV=1 gi\|170649678 - gi\|170649678\|gb\|ACB21263.1\| homeobox A5 (predicted) [Callicebus moloch]	123.0	[0..1]	[82..189]
gi\|61370212, gi\|... - gi\|61370212\|gb\|AAX43455.1\| homeobox A5 [synthetic construct], gi\|61370206\|gb\|AAX43454.1\| homeobox A5...	122.0	[0..1]	[82..189]
gi\|109067082 - gi\|109067082\|ref\|XP_001092687.1\| PREDICTED: similar to Homeobox protein Hox-A5 (Hox-1.3) (M2) isofor... gi\|114612539 - gi\|114612539\|ref\|XP_519011.2\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] gi\|160904219 - gi\|160904219\|gb\|ABX52203.1\| homeobox A5 (predicted) [Papio anubis]	122.0	[0..1]	[82..189]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DMTGPDGKRA RTAYTRYQTL ELEKEFHFNR YLTRRRRIEI AHALCLSERQ IKIWFQNRRM  60
   61 KWKKDNKLKS MSLASAGSAF QP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	1b8iA
Description:	Ultrabithorax (ubx) homeodomain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits