YRC Public Data Repository - Protein Structure Prediction

Protein:	HSLR_ECOLI
Organism:	Escherichia coli
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSLR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|85712731, gi\|... - gi\|85712731\|ref\|ZP_01043776.1\| Ribosome-associated heat shock protein implicated in the recycling of...	143.0	[0..5]	[130..3]
gi\|37683572 - gi\|37683572\|gb\|AAQ98837.1\| small ribosomal protein 4 [Pogonatum pergranulatum]	142.0	[0..5]	[108..71]
gi\|12330488 - gi\|12330488\|gb\|AAG52781.1\| ribosomal protein 4 [Oedipodium griffithianum]	142.0	[0..5]	[108..73]
gi\|20531098, gi\|... - gi\|22854741\|gb\|AAN09790.1\| small ribosomal protein 4 [Timmiella crassinervis], gi\|20531098\|gb\|AAM273... gi\|33413243 - gi\|33413243\|emb\|CAD86756.1\| ribosomal protein small subunit 4 [Timmiella anomala]	142.0	[0..5]	[108..70]
gi\|75211766, gi\|... - gi\|75211766\|ref\|ZP_00711830.1\| COG1188: Ribosome-associated heat shock protein implicated in the rec... gi\|209914112, gi... - gi\|209920853\|ref\|YP_002294937.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli SE11... gi\|190902068, gi... - gi\|75228946\|ref\|ZP_00715538.1\| COG1188: Ribosome-associated heat shock protein implicated in the rec... gi\|218555945, gi... - gi\|218555945\|ref\|YP_002388858.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli IAI1... gi\|193068834, gi... - gi\|75237001\|ref\|ZP_00721057.1\| COG1188: Ribosome-associated heat shock protein implicated in the rec... gi\|24053867, gi\|... - gi\|24114662\|ref\|NP_709172.1\| ribosome-associated heat shock protein Hsp15 [Shigella flexneri 2a str.... gi\|192932592, gi... - gi\|75260311\|ref\|ZP_00731579.1\| COG1188: Ribosome-associated heat shock protein implicated in the rec... gi\|81247166, gi\|... - gi\|82545755\|ref\|YP_409702.1\| ribosome-associated heat shock protein Hsp15 [Shigella boydii Sb227], g... gi\|30043579, gi\|... - gi\|30065317\|ref\|NP_839488.1\| ribosome-associated heat shock protein Hsp15 [Shigella flexneri 2a str.... gi\|187731270, gi... - gi\|75179982\|ref\|ZP_00699969.1\| COG1188: Ribosome-associated heat shock protein implicated in the rec... gi\|157156992, gi... - gi\|75188174\|ref\|ZP_00701441.1\| COG1188: Ribosome-associated heat shock protein implicated in the rec...	142.0	[0..1]	[133..1]
gi\|63191785 - gi\|63191785\|gb\|AAY34852.1\| small ribosomal protein subunit 4 [Bartramiopsis lescurii]	142.0	[0..5]	[108..69]
gi\|22854703 - gi\|22854703\|gb\|AAN09771.1\| small ribosomal protein 4 [Distichium capillaceum]	142.0	[0..5]	[108..73]
gi\|67035734 - gi\|67035734\|gb\|AAY62798.1\| small ribosomal protein subunit 4 [Bryobartramia novae-valesiae]	142.0	[0..5]	[108..72]
gi\|194430997, gi... - gi\|83571679\|ref\|ZP_00923119.1\| COG1188: Ribosome-associated heat shock protein implicated in the rec...	142.0	[0..1]	[133..1]
gi\|37548871 - gi\|37548871\|gb\|AAO32704.1\| ribosomal protein 4 [Pogonatum subulatum]	142.0	[0..5]	[108..21]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEKPAVEVR LDKWLWAARF YKTRALAREM IEGGKVHYNG QRSKPSKIVE LNATLTLRQG  60
   61 NDERTVIVKA ITEQRRPASE AALLYEETAE SVEKREKMAL ARKLNALTMP HPDRRPDKKE 120
  121 RRDLLRFKHG DSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.30103
Match:	1dm9A
Description:	Heat shock protein 15 kD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	0.15378395634409	bayes_pls_golite062009
structural molecule activity	0.145410712452618	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: