YRC Public Data Repository - Protein Structure Prediction

Protein:	HSLJ_ECOLI
Organism:	Escherichia coli
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSLJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75239989, gi\|... - gi\|75239989\|ref\|ZP_00723950.1\| COG3187: Heat shock protein [Escherichia coli E110019], gi\|193067091\|... gi\|75190436, gi\|... - gi\|75190436\|ref\|ZP_00703703.1\| COG3187: Heat shock protein [Escherichia coli E24377A], gi\|157155294\|...	149.0	[0..1]	[140..1]
gi\|75231853, gi\|... - gi\|75231853\|ref\|ZP_00718194.1\| COG3187: Heat shock protein [Escherichia coli B7A], gi\|191165105\|ref\|...	148.0	[0..1]	[140..1]
gi\|188490391, gi... - gi\|75515031\|ref\|ZP_00737235.1\| COG3187: Heat shock protein [Escherichia coli 53638], gi\|188495192\|re... gi\|75242147, gi\|... - gi\|75242147\|ref\|ZP_00725941.1\| COG3187: Heat shock protein [Escherichia coli F11], gi\|191170976\|ref\|... gi\|218426903, gi... - gi\|218689339\|ref\|YP_002397551.1\| heat-inducible protein [Escherichia coli ED1a], gi\|218426903\|emb\|CA... gi\|227836415, gi... - gi\|227886211\|ref\|ZP_04004016.1\| heat-inducible protein [Escherichia coli 83972], gi\|227836415\|gb\|EEJ... gi\|110641585, gi... - gi\|110641585\|ref\|YP_669315.1\| heat-inducible protein [Escherichia coli 536], gi\|110343177\|gb\|ABG6941... gi\|218694925, gi... - gi\|218694925\|ref\|YP_002402592.1\| heat-inducible protein [Escherichia coli 55989], gi\|218351657\|emb\|C... gi\|215264715, gi... - gi\|215486643\|ref\|YP_002329074.1\| heat-inducible protein [Escherichia coli O127:H6 str. E2348/69], gi...	148.0	[0..1]	[140..1]
gi\|218365105, gi... - gi\|218558336\|ref\|YP_002391249.1\| heat-inducible protein [Escherichia coli S88], gi\|218365105\|emb\|CAR... gi\|117623654, gi... - gi\|117623654\|ref\|YP_852567.1\| heat-inducible protein [Escherichia coli APEC O1], gi\|115512778\|gb\|ABJ...	148.0	[0..1]	[140..1]
gi\|26247688, gi\|... - gi\|26247688\|ref\|NP_753728.1\| heat-inducible protein [Escherichia coli CFT073], gi\|26108090\|gb\|AAN802...	147.0	[0..1]	[140..5]
gi\|13361467, gi\|... - gi\|15831255\|ref\|NP_310028.1\| heat-inducible protein [Escherichia coli O157:H7 str. Sakai], gi\|133614... gi\|254792943, gi... - gi\|254792943\|ref\|YP_003077780.1\| heat-inducible protein [Escherichia coli O157:H7 str. TW14359], gi\|... gi\|208818381, gi... - gi\|208818381\|ref\|ZP_03258701.1\| heat shock protein HslJ [Escherichia coli O157:H7 str. EC4042], gi\|2... gi\|209157424, gi... - gi\|209396024\|ref\|YP_002270409.1\| heat shock protein HslJ [Escherichia coli O157:H7 str. EC4115], gi\|... gi\|217317590, gi... - gi\|217329151\|ref\|ZP_03445231.1\| heat shock protein HslJ [Escherichia coli O157:H7 str. TW14588], gi\|... gi\|189377919, gi... - gi\|189377919\|gb\|EDU96335.1\| heat shock protein HslJ [Escherichia coli O157:H7 str. EC508], gi\|168799... gi\|195938017 - gi\|195938017\|ref\|ZP_03083399.1\| heat-inducible protein [Escherichia coli O157:H7 str. EC4024] gi\|208810927, gi... - gi\|208810927\|ref\|ZP_03252760.1\| heat shock protein HslJ [Escherichia coli O157:H7 str. EC4206], gi\|2... gi\|208816233, gi... - gi\|208816233\|ref\|ZP_03257412.1\| heat shock protein HslJ [Escherichia coli O157:H7 str. EC4045], gi\|2... gi\|168769438, gi... - gi\|189361547\|gb\|EDU79966.1\| heat shock protein HslJ [Escherichia coli O157:H7 str. EC4486], gi\|16876... gi\|187769261, gi... - gi\|187769261\|gb\|EDU33105.1\| heat shock protein HslJ [Escherichia coli O157:H7 str. EC4196], gi\|16877... gi\|188999668, gi... - gi\|188999668\|gb\|EDU68654.1\| heat shock protein HslJ [Escherichia coli O157:H7 str. EC4076], gi\|16878... gi\|168788319, gi... - gi\|189371889\|gb\|EDU90305.1\| heat shock protein HslJ [Escherichia coli O157:H7 str. EC869], gi\|168788... gi\|168749005, gi... - gi\|188016633\|gb\|EDU54755.1\| heat shock protein HslJ [Escherichia coli O157:H7 str. EC4113], gi\|16874... gi\|189356761, gi... - gi\|189356761\|gb\|EDU75180.1\| heat shock protein HslJ [Escherichia coli O157:H7 str. EC4401], gi\|16875... gi\|168763113, gi... - gi\|189366640\|gb\|EDU85056.1\| heat shock protein HslJ [Escherichia coli O157:H7 str. EC4501], gi\|16876... gi\|209771306, gi... - pir\|\|A85740 heat shock protein hslJ [imported] - Escherichia coli (strain O157:H7, substrain EDL933... gi\|12515321, gi\|... - gi\|15801749\|ref\|NP_287767.1\| heat-inducible protein [Escherichia coli O157:H7 EDL933], gi\|12515321\|g... gi\|13361467, gi\|... - gi\|15831255\|ref\|NP_310028.1\| HslJ [Escherichia coli O157:H7], gi\|13361467\|dbj\|BAB35424.1\| heat shock...	147.0	[0..1]	[140..1]
gi\|226900138, gi... - gi\|237705381\|ref\|ZP_04535862.1\| heat-inducible protein [Escherichia sp. 3_2_53FAA], gi\|226900138\|gb\|... gi\|91210645, gi\|... - gi\|91210645\|ref\|YP_540631.1\| heat-inducible protein [Escherichia coli UTI89], gi\|91072219\|gb\|ABE0710...	147.0	[0..1]	[140..5]
gi\|125618611, gi... - gi\|254848782\|ref\|ZP_05238132.1\| heat shock protein HslJ [Vibrio cholerae MO10], gi\|254844487\|gb\|EET2... gi\|153801006, gi... - gi\|153801006\|ref\|ZP_01955592.1\| heat shock protein HslJ [Vibrio cholerae MZO-3], gi\|124123476\|gb\|EAY... gi\|229515055, gi... - gi\|229515055\|ref\|ZP_04404515.1\| heat shock protein HslJ [Vibrio cholerae TMA 21], gi\|229347760\|gb\|EE... gi\|229351499, gi... - gi\|229511534\|ref\|ZP_04401013.1\| heat shock protein HslJ [Vibrio cholerae B33], gi\|229351499\|gb\|EEO16... gi\|15641667, gi\|... - gi\|9656177\|gb\|AAF94813.1\| heat shock protein HslJ [Vibrio cholerae O1 biovar El Tor str. N16961], gi... gi\|229355732, gi... - gi\|229508227\|ref\|ZP_04397732.1\| heat shock protein HslJ [Vibrio cholerae BX 330286], gi\|229355732\|gb... gi\|11292712 - pir\|\|H82172 heat shock protein HslJ VC1663 [imported] - Vibrio cholerae (strain N16961 serogroup O1... gi\|227081814, gi... - gi\|227081814\|ref\|YP_002810365.1\| heat shock protein HslJ [Vibrio cholerae M66-2], gi\|227009702\|gb\|AC... gi\|229333081, gi... - gi\|229529307\|ref\|ZP_04418697.1\| heat shock protein HslJ [Vibrio cholerae 12129(1)], gi\|229333081\|gb\|... gi\|229523750, gi... - gi\|229523750\|ref\|ZP_04413155.1\| heat shock protein HslJ [Vibrio cholerae bv. albensis VL426], gi\|229... gi\|229342292, gi... - gi\|229520737\|ref\|ZP_04410160.1\| heat shock protein HslJ [Vibrio cholerae TM 11079-80], gi\|229342292\|... gi\|150424666, gi... - gi\|254285394\|ref\|ZP_04960359.1\| heat shock protein HslJ [Vibrio cholerae AM-19226], gi\|197753241\|ref... gi\|229518673, gi... - gi\|229518673\|ref\|ZP_04408116.1\| heat shock protein HslJ [Vibrio cholerae RC9], gi\|229343362\|gb\|EEO08... gi\|153828855, gi... - gi\|153828855\|ref\|ZP_01981522.1\| heat shock protein HslJ [Vibrio cholerae 623-39], gi\|148875651\|gb\|ED... gi\|147674423, gi... - gi\|227118119\|ref\|YP_002820015.1\| heat shock protein HslJ [Vibrio cholerae O395], gi\|227013569\|gb\|ACP... gi\|229607801, gi... - gi\|229607801\|ref\|YP_002878449.1\| heat shock protein HslJ [Vibrio cholerae MJ-1236], gi\|229370456\|gb\|... gi\|121630315, gi... - gi\|121727309\|ref\|ZP_01680456.1\| heat shock protein HslJ [Vibrio cholerae V52], gi\|121630315\|gb\|EAX62... gi\|153221798, gi... - gi\|153221798\|ref\|ZP_01952683.1\| heat shock protein HslJ [Vibrio cholerae MAK 757], gi\|124119420\|gb\|E... gi\|124113477, gi... - gi\|153217576\|ref\|ZP_01951257.1\| heat shock protein HslJ [Vibrio cholerae 1587], gi\|124113477\|gb\|EAY3...	133.0	[0..2]	[139..6]
gi\|153837498, gi... - gi\|153837498\|ref\|ZP_01990165.1\| heat shock protein HslJ [Vibrio parahaemolyticus AQ3810], gi\|1497491... gi\|28806191, gi\|... - gi\|28897977\|ref\|NP_797582.1\| heat shock protein HslJ [Vibrio parahaemolyticus RIMD 2210633], gi\|2880... gi\|28806191 - gi\|28806191\|dbj\|BAC59466.1\| heat shock protein HslJ [Vibrio parahaemolyticus RIMD 2210633]	132.0	[0..1]	[140..5]
gi\|91189415, gi\|... - gi\|91225974\|ref\|ZP_01260901.1\| heat shock protein HslJ [Vibrio alginolyticus 12G01], gi\|91189415\|gb\|...	131.0	[0..1]	[140..5]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVAAFVAL SLLMAGCVSN DKIAVTPEQL QHHRFVLESV NGKPVTSDKN PPEISFGEKM  60
   61 MISGSMCNRF SGEGKLSNGE LTAKGLAMTR MMCANPQLNE LDNTISEMLK EGAQVDLTAN 120
  121 QLTLATAKQT LTYKLADLMN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.283997
Match:	PF03724.7
Description:	No description for PF03724.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.707	N/A	N/A	b.89.1	Cyanovirin-N
View	Download	0.648	N/A	N/A	d.131.1	DNA clamp
View	Download	0.593	N/A	N/A	b.1.1	Immunoglobulin
View	Download	0.515	N/A	N/A	d.131.1	DNA clamp
View	Download	0.514	N/A	N/A	d.131.1	DNA clamp

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits