YRC Public Data Repository - Protein Structure Prediction

Protein:	HLPA_ECOLI, SKP_...
Organism:	Escherichia coli
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HLPA_ECOLI, SKP_....

Description	E-value	Query Range	Subject Range
gi\|33573186 - gi\|33573186\|emb\|CAE36838.1\| putative outer membrane protein [Bordetella parapertussis] gi\|33596183 - gi\|33596183\|ref\|NP_883826.1\| putative outer membrane protein [Bordetella parapertussis 12822]	129.0	[0..6]	[160..47]
gi\|115422823, gi... - gi\|187478237\|ref\|YP_786261.1\| outer membrane protein [Bordetella avium 197N], gi\|115422823\|emb\|CAJ49...	127.0	[0..6]	[160..26]
gi\|33601591, gi\|... - gi\|33601591\|ref\|NP_889151.1\| putative outer membrane protein [Bordetella bronchiseptica RB50], gi\|33... gi\|33572172, gi\|... - gi\|33592526\|ref\|NP_880170.1\| putative outer membrane protein [Bordetella pertussis Tohama I], gi\|335...	126.0	[0..6]	[160..31]
gi\|91697773, gi\|... - gi\|91788548\|ref\|YP_549500.1\| outer membrane chaperone Skp (OmpH) [Polaromonas sp. JS666], gi\|9169777...	120.0	[0..3]	[160..7]
SKP_PHOLL - Chaperone protein Skp OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / ... SKP_PHOLL - Chaperone protein skp OS=Photorhabdus luminescens subsp. laumondii GN=skp PE=3 SV=1	120.0	[0..1]	[161..1]
SKP_PHOLU - Chaperone protein Skp OS=Photorhabdus luminescens GN=skp PE=3 SV=1	120.0	[0..1]	[161..1]
gi\|85059912, gi\|... - gi\|85059912\|ref\|YP_455614.1\| periplasmic chaperone [Sodalis glossinidius str. 'morsitans'], gi\|84780...	119.0	[0..1]	[161..1]
gi\|21960048, gi\|... - gi\|22127002\|ref\|NP_670425.1\| periplasmic chaperone [Yersinia pestis KIM], gi\|21960048\|gb\|AAM86676.1\|... gi\|45437430, gi\|... - gi\|45442565\|ref\|NP_994104.1\| periplasmic chaperone [Yersinia pestis biovar Microtus str. 91001], gi\|...	119.0	[0..18]	[161..51]
gi\|77633947 - gi\|77633947\|ref\|ZP_00796059.1\| COG2825: Outer membrane protein [Yersinia pestis Angola] gi\|117672747, gi... - gi\|77630028\|ref\|ZP_00792614.1\| COG2825: Outer membrane protein [Yersinia pseudotuberculosis IP 31758... gi\|89105143 - gi\|89105143\|ref\|ZP_01177668.1\| COG2825: Outer membrane protein [Yersinia pestis biovar Orientalis st...	119.0	[0..18]	[161..50]
gi\|77963166 - gi\|77963166\|ref\|ZP_00826978.1\| COG2825: Outer membrane protein [Yersinia mollaretii ATCC 43969]	119.0	[0..18]	[161..37]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKWLLAAGL GLALATSAQA ADKIAIVNMG SLFQQVAQKT GVSNTLENEF KGRASELQRM  60
   61 ETDLQAKMKK LQSMKAGSDR TKLEKDVMAQ RQTFAQKAQA FEQDRARRSN EERGKLVTRI 120
  121 QTAVKSVANS QDIDLVVDAN AVAYNSSDVK DITADVLKQV K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.522879
Match:	1sg2A
Description:	Crystal structure of the periplasmic chaperone Skp
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.90264670077178	bayes_pls_golite062009
unfolded protein binding	1.7887148828099	bayes_pls_golite062009
protein binding	0.404450175883241	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: