YRC Public Data Repository - Protein Structure Prediction

Protein:	HIS9_DEIRA
Organism:	Deinococcus radiodurans
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HIS9_DEIRA.

Description	E-value	Query Range	Subject Range
gi\|67873315, gi\|... - gi\|67873315\|ref\|ZP_00503594.1\| DNA polymerase III alpha subunit [Clostridium thermocellum ATCC 27405... gi\|196197685, gi... - gi\|196252892\|ref\|ZP_03151539.1\| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 4150...	4.0E-47	[1..258]	[2..237]
gi\|83573620, gi\|... - gi\|83590706\|ref\|YP_430715.1\| DNA polymerase III DnaE [Moorella thermoacetica ATCC 39073], gi\|8357362...	1.0E-45	[1..258]	[1..236]
gi\|76588070, gi\|... - gi\|76796566\|ref\|ZP_00778925.1\| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus ATC... gi\|241885225, gi... - gi\|241902510\|ref\|ZP_04787244.1\| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii subsp....	4.0E-45	[4..258]	[2..234]
gi\|114845143, gi... - gi\|167039837\|ref\|YP_001662822.1\| DNA polymerase III DnaE [Thermoanaerobacter sp. X514], gi\|166854077...	6.0E-45	[4..258]	[2..234]
gi\|110166605, gi... - gi\|113475557\|ref\|YP_721618.1\| DNA polymerase III, alpha subunit / intein [Trichodesmium erythraeum I...	2.0E-44	[4..258]	[3..236]
gi\|55771713, gi\|... - gi\|55980300\|ref\|YP_143597.1\| histidinol-phosphatase [Thermus thermophilus HB8], gi\|55771713\|dbj\|BAD7... gi\|161172306, gi... - gi\|161172306\|pdb\|2Z4G\|B Chain B, Histidinol Phosphate Phosphatase From Thermus Thermophilus Hb8, gi\|...	4.0E-44	[4..254]	[1..253]
gi\|33632735, gi\|... - gi\|33865566\|ref\|NP_897125.1\| DNA polymerase III subunit alpha [Synechococcus sp. WH 8102], gi\|336327...	5.0E-44	[4..258]	[3..238]
gi\|20808235, gi\|... - gi\|20808235\|ref\|NP_623406.1\| DNA polymerase III DnaE [Thermoanaerobacter tengcongensis MB4], gi\|2051... gi\|20808235 - gi\|20808235\|ref\|NP_623406.1\| DNA polymerase III subunit alpha [Thermoanaerobacter tengcongensis MB4]	5.0E-44	[4..258]	[5..237]
gi\|78197148, gi\|... - gi\|78212689\|ref\|YP_381468.1\| DNA polymerase III subunit alpha [Synechococcus sp. CC9605], gi\|7819714...	6.0E-44	[4..258]	[3..238]
gi\|46199954, gi\|... - gi\|46199954\|ref\|YP_005621.1\| histidinol-phosphatase [Thermus thermophilus HB27], gi\|46197581\|gb\|AAS8...	6.0E-44	[4..254]	[1..253]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGLCDSHLH TPLCGHATGT PREYAQAALD AGLSGLCFTD HMPMPRWYDA PWRMKLEQLP  60
   61 EYIAEIQAVQ QEFAGRLDVR LGLEADFHPG TEKFVEKVLG MFDWDYVIGS VHYLGAWGFD 120
  121 NPEFVAEYEE RDLGGLYRDY YALVEGAARS GLFDAIGHLD LPKKFGHLDP DPVYALHALD 180
  181 VVAGQGLALD FNTAGWRKPV AEAYPAPDLV RAAAERGIPF VLGSDAHQPG EVGFRFADAV 240
  241 KEIRDVGGRT VTFRHRKMQP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.30103
Match:	2hpiA
Description:	No description for 2hpiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits