YRC Public Data Repository - Protein Structure Prediction

Protein:	HIS3_DESVH
Organism:	Desulfovibrio vulgaris str. Hildenborough
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HIS3_DESVH.

Description	E-value	Query Range	Subject Range
HIS3_DESAG - Phosphoribosyl-AMP cyclohydrolase OS=Desulfovibrio alaskensis (strain G20) GN=hisI PE=3 SV=1	214.0	[0..3]	[126..7]
HIS3_AZOVD - Phosphoribosyl-AMP cyclohydrolase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=hisI PE=3... gi\|53612300, gi\|... - gi\|67158084\|ref\|ZP_00419174.1\| Phosphoribosyl-AMP cyclohydrolase [Azotobacter vinelandii AvOP], ref\|...	206.0	[0..10]	[126..11]
gi\|49077240 - gi\|49077240\|gb\|AAT49653.1\| PA5066 [synthetic construct]	206.0	[0..10]	[126..11]
HIS3_PSEAE - Phosphoribosyl-AMP cyclohydrolase OS=Pseudomonas aeruginosa GN=hisI PE=3 SV=1 HIS3_PSEA8 - Phosphoribosyl-AMP cyclohydrolase OS=Pseudomonas aeruginosa (strain LESB58) GN=hisI PE=3 SV=1 HIS3_PSEAE - Phosphoribosyl-AMP cyclohydrolase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101... gi\|84317687, gi\|... - gi\|84317687\|ref\|ZP_00966125.1\| COG0139: Phosphoribosyl-AMP cyclohydrolase [Pseudomonas aeruginosa C3... gi\|84323848, gi\|... - gi\|84323848\|ref\|ZP_00971915.1\| COG0139: Phosphoribosyl-AMP cyclohydrolase [Pseudomonas aeruginosa 21... gi\|107104165 - gi\|107104165\|ref\|ZP_01368083.1\| hypothetical protein PaerPA_01005238 [Pseudomonas aeruginosa PACS2]	205.0	[0..10]	[126..11]
HIS3_PSEA7 - Phosphoribosyl-AMP cyclohydrolase OS=Pseudomonas aeruginosa (strain PA7) GN=hisI PE=3 SV=1	205.0	[0..10]	[126..11]
HIS3_PSEAB - Phosphoribosyl-AMP cyclohydrolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hisI PE=3 SV=1	205.0	[0..10]	[126..11]
HIS31_PSEF5 - Phosphoribosyl-AMP cyclohydrolase 1 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=hisI1...	204.0	[0..5]	[125..7]
gi\|83719448, gi\|... - gi\|83719448\|ref\|YP_443490.1\| phosphoribosyl-AMP cyclohydrolase [Burkholderia thailandensis E264], gi...	202.0	[0..5]	[126..147]
gi\|1224005 - gi\|1224005\|gb\|AAA92106.1\| HisI [Azotobacter chroococcum] HIS3_AZOCH - Phosphoribosyl-AMP cyclohydrolase OS=Azotobacter chroococcum mcd 1 GN=hisI PE=3 SV=1	202.0	[0..10]	[125..11]
gi\|91689328, gi\|... - gi\|91785374\|ref\|YP_560580.1\| phosphoribosyl-AMP cyclohydrolase [Burkholderia xenovorans LB400], gi\|9...	202.0	[0..5]	[126..12]

Back

Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAFVPDFGK AGGLVPAIAQ DADTGEVLMM AWMNAEAFEM TLKTGEAHYF SRSRGRLWHK  60
   61 GGTSGHTQHI RAVRLDCDSD TILLLVEQRG GAACHEGYRS CFYREMKDGE VSICSPKVFD 120
  121 PKEVYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.30103
Match:	1zpsA
Description:	Crystal structure of Methanobacterium thermoautotrophicum phosphoribosyl-AMP cyclohydrolase HisI
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits