YRC Public Data Repository - Protein Structure Prediction

Protein:	HIPA_ECOLI
Organism:	Escherichia coli
Length:	440 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HIPA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75237143 - gi\|75237143\|ref\|ZP_00721193.1\| COG3550: Uncharacterized protein related to capsule biosynthesis enzy...	482.0	[0..1]	[440..1]
gi\|83587858, gi\|... - gi\|83587858\|ref\|ZP_00926484.1\| COG3550: Uncharacterized protein related to capsule biosynthesis enzy...	480.0	[0..1]	[440..1]
gi\|117623738, gi... - gi\|117623738\|ref\|YP_852651.1\| regulator with HipB [Escherichia coli APEC O1], gi\|115512862\|gb\|ABJ009...	476.0	[0..1]	[440..20]
gi\|75257775, gi\|... - gi\|75257775\|ref\|ZP_00729260.1\| COG3550: Uncharacterized protein related to capsule biosynthesis enzy... gi\|218554042, gi... - gi\|218554042\|ref\|YP_002386955.1\| regulator with hipB [Escherichia coli IAI1], gi\|218360810\|emb\|CAQ98... gi\|218695046, gi... - gi\|218695046\|ref\|YP_002402713.1\| regulator with hipB [Escherichia coli 55989], gi\|218351778\|emb\|CAU9...	476.0	[0..1]	[440..1]
gi\|75231734 - gi\|75231734\|ref\|ZP_00718075.1\| COG3550: Uncharacterized protein related to capsule biosynthesis enzy...	475.0	[0..1]	[440..1]
gi\|75239862 - gi\|75239862\|ref\|ZP_00723823.1\| COG3550: Uncharacterized protein related to capsule biosynthesis enzy...	475.0	[0..1]	[440..1]
gi\|26247796, gi\|... - gi\|26247796\|ref\|NP_753836.1\| protein hipA [Escherichia coli CFT073], gi\|26108198\|gb\|AAN80398.1\|AE016...	470.0	[0..1]	[435..3]
gi\|146354 - gi\|146354\|gb\|AAA56878.1\| hipA	470.0	[0..1]	[440..1]
gi\|37528706, gi\|... - gi\|37528706\|ref\|NP_932051.1\| HipA protein [Photorhabdus luminescens subsp. laumondii TTO1], gi\|36788...	443.0	[0..1]	[434..1]
gi\|59480178, gi\|... - gi\|59712077\|ref\|YP_204853.1\| HipA serine kinase, regulator with HipB, putative TA-system [Vibrio fis...	442.0	[0..1]	[437..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKLVTWMNN QRVGELTKLA NGAHTFKYAP EWLASRYARP LSLSLPLQRG NITSDAVFNF  60
   61 FDNLLPDSPI VRDRIVKRYH AKSRQPFDLL SEIGRDSVGA VTLIPEDETV THPIMAW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [118-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKLTEARLEE VLTAYKADIP LGMIREENDF RISVAGAQEK TALLRIGNDW CIPKGITPTT  60
   61 HIIKLPIGEI RQPNATLDLS QSVDNEYYCL LLAKELGLNV PDAEIIKAGN VRALAVERFD 120
  121 RRWNAER

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.920819
Match:	PF07805.3
Description:	No description for PF07805.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [245-344]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVLLRLPQED MCQTFGLPSS VKYESDGGPG IARIMAFLMG SSEALKDRYD FMKFQVFQWL  60
   61 IGATDGHAKN FSVFIQAGGS YRLTPFYDII SAFPVLGGTG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	38.508638
Match:	PF07804.3
Description:	No description for PF07804.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [345-440]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IHISDLKLAM GLNASKGKKT AIDKIYPRHF LATAKVLRFP EVQMHEILSD FARMIPAALD  60
   61 NVKTSLPTDF PENVVTAVES NVLRLHGRLS REYGSK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits