YRC Public Data Repository - Protein Structure Prediction

Protein:	HDED_ECOLI
Organism:	Escherichia coli
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HDED_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|254250115, gi... - gi\|84352623\|ref\|ZP_00977576.1\| hypothetical protein BcenP_01005317 [Burkholderia cenocepacia PC184],...	111.0	[0..8]	[189..5]
gi\|72609020, gi\|... - gi\|74018488\|ref\|ZP_00689109.1\| hypothetical protein BambDRAFT_2066 [Burkholderia ambifaria AMMD], gi...	110.0	[0..8]	[189..5]
gi\|107025775, gi... - gi\|67660928\|ref\|ZP_00458262.1\| hypothetical protein BcenDRAFT_0463 [Burkholderia cenocepacia AU 1054... gi\|116693044, gi... - gi\|67667637\|ref\|ZP_00464853.1\| hypothetical protein Bcen2424DRAFT_0778 [Burkholderia cenocepacia HI2...	110.0	[0..8]	[189..5]
gi\|86750069, gi\|... - gi\|86750069\|ref\|YP_486565.1\| hypothetical protein RPB_2952 [Rhodopseudomonas palustris HaA2], gi\|865...	103.0	[0..2]	[189..3]
gi\|186683261, gi... - gi\|23128454\|ref\|ZP_00110301.1\| COG3247: Uncharacterized conserved protein [Nostoc punctiforme PCC 73...	102.0	[0..3]	[187..12]
gi\|84359392, gi\|... - gi\|84359392\|ref\|ZP_00984139.1\| hypothetical protein BdolA_01004094 [Burkholderia dolosa AUO158], gi\|...	101.0	[0..9]	[189..6]
gi\|91686500, gi\|... - gi\|91782546\|ref\|YP_557752.1\| hypothetical protein Bxe_A3282 [Burkholderia xenovorans LB400], gi\|9168...	101.0	[0..8]	[189..5]
gi\|108466521, gi... - gi\|108762641\|ref\|YP_631917.1\| hypothetical protein MXAN_3732 [Myxococcus xanthus DK 1622], gi\|108466...	100.0	[0..13]	[188..60]
gi\|85695834, gi\|... - gi\|85717359\|ref\|ZP_01048311.1\| hypothetical protein NB311A_18893 [Nitrobacter sp. Nb-311A], gi\|85695...	100.0	[0..5]	[190..7]
gi\|68556909, gi\|... - gi\|94314306\|ref\|YP_587515.1\| hypothetical protein Rmet_5387 [Ralstonia metallidurans CH34], gi\|93358...	100.0	[0..9]	[189..6]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYIDKATIL KFDLEMLKKH RRAIQFIAVL LFIVGLLCIS FPFVSGDILS TVVGALLICS  60
   61 GIALIVGLFS NRSHNFWPVL SGFLVAVAYL LIGYFFIRAP ELGIFAIAAF IAGLFCVAGV 120
  121 IRLMSWYRQR SMKGSWLQLV IGVLDIVIAW IFLGATPMVS VTLVSTLVGI ELIFSAASLF 180
  181 SFASLFVKQQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits