YRC Public Data Repository - Protein Structure Prediction

Protein:	HCAC_ECOLI
Organism:	Escherichia coli
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HCAC_ECOLI.

Description	E-value	Query Range	Subject Range
HCAC_SHIF8 - 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit OS=Shigella flexneri serotype 5b (st...	122.0	[0..1]	[106..1]
HCAC_SHIBS - 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit OS=Shigella boydii serotype 4 (strai...	120.0	[0..1]	[106..1]
gi\|75237714, gi\|... - gi\|75237714\|ref\|ZP_00721730.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat...	119.0	[0..1]	[106..1]
HCAC_PHOLL - 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit OS=Photorhabdus luminescens subsp. l... HCAC_PHOLL - 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit OS=Photorhabdus luminescens subsp. l...	118.0	[0..1]	[104..1]
gi\|25400847 - pir\|\|H87635 Rieske 2Fe-2S family protein [imported] - Caulobacter crescentus gi\|16127352, gi\|... - gi\|16127352\|ref\|NP_421916.1\| Rieske 2Fe-2S family protein [Caulobacter crescentus CB15], gi\|13424782... gi\|221236158, gi... - gi\|221236158\|ref\|YP_002518595.1\| ring hydroxylating dioxygenase, alpha-subunit [Caulobacter crescent...	109.0	[0..2]	[106..61]
gi\|119385556, gi... - gi\|69935592\|ref\|ZP_00630528.1\| Rieske [2Fe-2S] region [Paracoccus denitrificans PD1222], gi\|69153080...	108.0	[0..2]	[106..42]
gi\|5931577 - gi\|5931577\|dbj\|BAA84712.1\| Iron-sulfur protein large subunit [Nocardioides sp.] gi\|7619816 - gi\|7619816\|dbj\|BAA94708.1\| iron-sulfur protein large subunit [Nocardioides sp. KP7]	108.0	[0..2]	[106..48]
gi\|23126234, gi\|... - gi\|23126234\|ref\|ZP_00108136.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ...	108.0	[0..3]	[106..14]
gi\|84359347 - gi\|84359347\|ref\|ZP_00984095.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ...	108.0	[0..3]	[106..43]
gi\|71916116, gi\|... - gi\|72162384\|ref\|YP_290041.1\| putative dioxygenase [Thermobifida fusca YX], gi\|71916116\|gb\|AAZ56018.1... gi\|48837079 - ref\|ZP_00294074.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygen...	107.0	[0..2]	[104..6]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRIYACPVA DVPEGEALRI DTSPVIALFN VGGEFYAIND RCSHGNASMS EGYLEDDATV  60
   61 ECPLHAASFC LKTGKALCLP ATDPLTTYPV HVEGGDIFID LPEAQP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	2e4pA
Description:	No description for 2e4pA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits