YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254223982, gi...
Organism:	Vibrio cholerae RC385
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254223982, gi....

Description	E-value	Query Range	Subject Range
gi\|116219659, gi... - gi\|75819123\|ref\|ZP_00749220.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio chole...	218.0	[0..20]	[261..1]
gi\|75827771 - gi\|75827771\|ref\|ZP_00757206.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio chole... gi\|229354934, gi... - gi\|229507429\|ref\|ZP_04396934.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae BX 3... gi\|116189455, gi... - gi\|75830552\|ref\|ZP_00759828.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio chole... gi\|75815119 - gi\|75815119\|ref\|ZP_00745644.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio chole... gi\|75824174, gi\|... - gi\|75824174\|ref\|ZP_00753637.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio chole... gi\|229338077, gi... - gi\|229524496\|ref\|ZP_04413901.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae bv. ... gi\|229516771, gi... - gi\|229516771\|ref\|ZP_04406217.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae RC9]... gi\|229513439, gi... - gi\|229513439\|ref\|ZP_04402903.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae TMA ... gi\|229353120, gi... - gi\|229509646\|ref\|ZP_04399127.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae B33]... gi\|229369591, gi... - gi\|229606936\|ref\|YP_002877584.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae MJ-... gi\|229335184, gi... - gi\|229527552\|ref\|ZP_04416944.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae 1212... tr\|A0A085QC14\|A0... - 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Vibrio cholerae GN=DN30_1636 PE=3 SV=1	216.0	[0..20]	[261..1]
gi\|91225573, gi\|... - gi\|91225573\|ref\|ZP_01260647.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio alginolyticus ... gi\|254229288, gi... - gi\|75856340\|ref\|ZP_00763970.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio sp. E...	207.0	[0..20]	[259..1]
gi\|27362190, gi\|... - gi\|27365990\|ref\|NP_761518.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio vulnificus CMCP6...	204.0	[0..20]	[260..1]
gi\|59479110, gi\|... - gi\|59711009\|ref\|YP_203785.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio fischeri ES114],...	204.0	[0..19]	[259..11]
gi\|52424565, gi\|... - gi\|52424565\|ref\|YP_087702.1\| PlsC protein [Mannheimia succiniciproducens MBEL55E], gi\|52306617\|gb\|AA...	202.0	[0..20]	[256..1]
gi\|77959539, gi\|... - gi\|77959539\|ref\|ZP_00823558.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia ber...	202.0	[0..20]	[260..1]
gi\|28899431, gi\|... - gi\|28899431\|ref\|NP_799036.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio parahaemolyticus... gi\|28807667 - gi\|28807667\|dbj\|BAC60920.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio parahaemolyticus ... gi\|153839295, gi... - gi\|153839295\|ref\|ZP_01991962.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio parahaemolyti...	202.0	[0..20]	[259..1]
gi\|169749448, gi... - gi\|170022914\|ref\|YP_001719419.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pseudotube... gi\|167469329 - gi\|167469329\|ref\|ZP_02334033.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pestis FV-1... gi\|166962801, gi... - gi\|167418807\|ref\|ZP_02310560.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pestis biov... gi\|167398515, gi... - gi\|167398515\|ref\|ZP_02304039.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pestis biov... gi\|186699856, gi... - gi\|186896830\|ref\|YP_001873942.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pseudotube... gi\|162421401, gi... - gi\|162421401\|ref\|YP_001604892.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pestis Ang... gi\|166211993, gi... - gi\|166211993\|ref\|ZP_02238028.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pestis biov... gi\|229705478, gi... - gi\|229837355\|ref\|ZP_04457518.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pestis Pest... gi\|229682232, gi... - gi\|229900893\|ref\|ZP_04516017.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pestis Nepa... gi\|166008748, gi... - gi\|166008748\|ref\|ZP_02229646.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pestis biov... gi\|108809110, gi... - gi\|108809110\|ref\|YP_653026.1\| putative acyltransferase [Yersinia pestis Antiqua], gi\|108781023\|gb\|AB... gi\|165939859, gi... - gi\|165939859\|ref\|ZP_02228398.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pestis biov... gi\|229690152, gi... - gi\|229842885\|ref\|ZP_04463037.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pestis biov... gi\|165923174, gi... - gi\|165924974\|ref\|ZP_02220806.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pestis biov... gi\|229696932, gi... - gi\|229840566\|ref\|ZP_04460725.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pestis biov... gi\|25346998 - pir\|\|AC0083 1-acylglycerol-3-phosphate O-acyltransferase (EC 2.3.1.51) [imported] - Yersinia pestis ... gi\|51597689, gi\|... - gi\|51597689\|ref\|YP_071880.1\| putative acyltransferase (LPAAT) [Yersinia pseudotuberculosis IP 32953]... gi\|45437617, gi\|... - gi\|45442751\|ref\|NP_994290.1\| putative acyltransferase [Yersinia pestis biovar Microtus str. 91001], ... Q665W9\|Q665W9_YERPS - Putative acyltransferase (LPAAT) precursor - Yersinia pseudotuberculosis gi\|16120997, gi\|... - gi\|218927865\|ref\|YP_002345740.1\| putative acyltransferase [Yersinia pestis CO92], gi\|16120997\|ref\|NP... gi\|153947585, gi... - gi\|153947585\|ref\|YP_001399575.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pseudotube... gi\|149289704, gi... - gi\|150260296\|ref\|ZP_01917024.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pestis CA88... gi\|145597765, gi... - gi\|145597765\|ref\|YP_001161841.1\| acyltransferase [Yersinia pestis Pestoides F], gi\|145209461\|gb\|ABP3...	202.0	[0..20]	[256..1]
gi\|167425098, gi... - gi\|167425098\|ref\|ZP_02316851.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pestis biov... gi\|21960466, gi\|... - gi\|22127380\|ref\|NP_670803.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pestis KIM], g...	202.0	[0..20]	[256..1]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRNPRVSAF FFQCLRRSCM IALLRILAVA VFAVYMFVFG CGYCLFSPRN PKHVYTFGKQ  60
   61 FAAMSKVFGI KLEYRAPADV DQRGQHIYIA NHQNNWDLFT VSKAVTPKVV TVGKKSLAWM 120
  121 PLFGQLYWLT GNILIDRANK AKAKGTIDQV VDSMKQSDVS VWMFPEGTRS RGRGLLPFKA 180
  181 GAFHAAIGAG VPIIPIVCSS TDKLKFNRWN NGHVIVEVLP PISTEGYSKE NIRELSQHCY 240
  241 DLMKAKLAQL DAEVAELNRK A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.0
Match:	1iuqA
Description:	The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits