YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|148557851, gi...
Organism:	Brucella ovis ATCC 25840
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|148557851, gi....

Description	E-value	Query Range	Subject Range
gi\|83269547 - gi\|83269547\|ref\|YP_418838.1\| DSBA oxidoreductase [Brucella melitensis biovar Abortus 2308] gi\|254691063 - gi\|254691063\|ref\|ZP_05154317.1\| DSBA oxidoreductase [Brucella abortus bv. 6 str. 870] gi\|254695631 - gi\|254695631\|ref\|ZP_05157459.1\| DSBA oxidoreductase [Brucella abortus bv. 3 str. Tulya] gi\|82939821 - gi\|82939821\|emb\|CAJ12829.1\| DSBA oxidoreductase [Brucella melitensis biovar Abortus 2308] gi\|189022820, gi... - gi\|189022820\|ref\|YP_001932561.1\| DSBA oxidoreductase [Brucella abortus S19], gi\|189021394\|gb\|ACD7411... gi\|62317566, gi\|... - gi\|62317566\|ref\|YP_223419.1\| hypothetical protein BruAb2_0647 [Brucella abortus bv. 1 str. 9-941], g... gi\|237787926, gi... - gi\|237817113\|ref\|ZP_04596105.1\| Hypothetical protein, conserved [Brucella abortus str. 2308 A], gi\|2... gi\|254698848 - gi\|254698848\|ref\|ZP_05160676.1\| DSBA oxidoreductase [Brucella abortus bv. 2 str. 86/8/59] gi\|254732295 - gi\|254732295\|ref\|ZP_05190873.1\| DSBA oxidoreductase [Brucella abortus bv. 4 str. 292]	206.0	[0..1]	[224..1]
RPA3868 - RPA3868 putatively similar to frnE protein 4368610:4369275 reverse MW:24551	192.0	[0..2]	[222..3]
gi\|115256788, gi... - gi\|116252140\|ref\|YP_767978.1\| Dsb family thioredoxin protein [Rhizobium leguminosarum bv. viciae 384...	190.0	[0..3]	[219..1]
gi\|77654269, gi\|... - gi\|91976195\|ref\|YP_568854.1\| DSBA oxidoreductase [Rhodopseudomonas palustris BisB5], gi\|91682651\|gb\|...	190.0	[0..1]	[222..1]
gi\|86573893, gi\|... - gi\|86750865\|ref\|YP_487361.1\| DSBA oxidoreductase [Rhodopseudomonas palustris HaA2], gi\|86573893\|gb\|A...	187.0	[0..1]	[222..1]
gi\|86281819, gi\|... - gi\|86357717\|ref\|YP_469609.1\| putative dithiol-disulfide isomerase protein (involved in polyketide bi...	186.0	[0..3]	[219..1]
gi\|83311562, gi\|... - gi\|83311562\|ref\|YP_421826.1\| polyketide biosynthesis dithiol-disulfide isomerase [Magnetospirillum m...	185.0	[0..6]	[221..1]
gi\|46202167 - gi\|46202167\|ref\|ZP_00208412.1\| COG2761: Predicted dithiol-disulfide isomerase involved in polyketide...	185.0	[0..6]	[221..1]
gi\|17740217, gi\|... - gi\|17935668\|ref\|NP_532458.1\| polyketide biosynthesis associated protein [Agrobacterium tumefaciens s... gi\|25367092, gi\|... - pir\|\|AH2794 polyketide biosynthesis associated protein Atu1775 [imported] - Agrobacterium tumefacien...	185.0	[0..2]	[214..20]
gi\|56418737, gi\|... - gi\|56418737\|ref\|YP_146055.1\| protein-disulfide isomerase [Geobacillus kaustophilus HTA426], gi\|56378...	183.0	[0..6]	[219..1]

Back

Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGKKITIDV VSDVVCPWCF LGRKRLEAAL ASLPDVEAEI RWRPFQLDPT LPPHGKDRQT  60
   61 YLREKFGTGS KIDDSHRQLR ALGEEYGIVF DFDAIIRAPN TLDAHRVIHW AAQAAPDTQD 120
  121 RMVGMLFSLY FEQGQDIGNH EVLVDAAASV SMDAEVVARL LQSEADKDTI RDEIATANRI 180
  181 GVRGVPCFII DQKYAVMGAQ TPDVLADAIR QTAEGFEPGI AEDR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.045757
Match:	1r4wA
Description:	Crystal structure of Mitochondrial class kappa glutathione transferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.672192331361968	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: