YRC Public Data Repository - Protein Structure Prediction

Protein:	GTRB_ECOLI
Organism:	Escherichia coli
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GTRB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|148259737, gi... - gi\|88939750\|ref\|ZP_01145196.1\| putative glycosyl transferase [Acidiphilium cryptum JF-5], gi\|8892158...	262.0	[0..3]	[304..38]
gi\|67923617, gi\|... - gi\|67923617\|ref\|ZP_00517088.1\| Glycosyl transferase, family 2 [Crocosphaera watsonii WH 8501], gi\|67...	261.0	[0..1]	[305..8]
gi\|114315555, gi... - gi\|114327381\|ref\|YP_744538.1\| polyprenyl-phosphate beta-D-glucosyltransferase [Granulibacter bethesd...	258.0	[0..4]	[303..23]
gi\|52424719, gi\|... - gi\|52424719\|ref\|YP_087856.1\| WcaA protein [Mannheimia succiniciproducens MBEL55E], gi\|52306771\|gb\|AA...	257.0	[0..1]	[305..1]
gi\|91226929, gi\|... - gi\|91226929\|ref\|ZP_01261526.1\| hypothetical glycosyl transferase [Vibrio alginolyticus 12G01], gi\|91...	256.0	[0..3]	[306..24]
gi\|86607088 - gi\|86607088\|ref\|YP_475851.1\| glycosyl transferase, group 2 family protein [Cyanobacteria bacterium Y... gi\|86607088, gi\|... - gi\|86607088\|ref\|YP_475851.1\| glycosyl transferase, group 2 family protein [Synechococcus sp. JA-3-3A...	256.0	[0..2]	[302..9]
gi\|33566892 - gi\|33566892\|emb\|CAE39108.1\| putative glycosyl transferase [Bordetella parapertussis] gi\|33598334 - gi\|33598334\|ref\|NP_885977.1\| putative glycosyl transferase [Bordetella parapertussis 12822] gi\|33591624, gi\|... - gi\|33591624\|ref\|NP_879268.1\| putative glycosyl transferase [Bordetella pertussis Tohama I], gi\|33571...	255.0	[0..1]	[304..37]
gi\|205331003, gi... - gi\|205331003\|gb\|EDZ17767.1\| bactoprenol glucosyl transferase [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=yfdH] [protein=putative glycosyltransferase] [protein_id=YP_005236262.1] [location=complement(... gi\|205339718, gi... - gi\|205339718\|gb\|EDZ26482.1\| bactoprenol glucosyl transferase [Salmonella enterica subsp. enterica se... gi\|16419067, gi\|... - gi\|16763936\|ref\|NP_459551.1\| putative glycosyltransferase [Salmonella typhimurium LT2], gi\|16419067\|... gi\|194449865, gi... - gi\|194449865\|ref\|YP_002044591.1\| bactoprenol glucosyl transferase [Salmonella enterica subsp. enteri... gi\|197242793, gi... - gi\|197264538\|ref\|ZP_03164612.1\| bactoprenol glucosyl transferase [Salmonella enterica subsp. enteric...	255.0	[0..1]	[306..1]
gi\|33603244, gi\|... - gi\|33603244\|ref\|NP_890804.1\| putative glycosyl transferase [Bordetella bronchiseptica RB50], gi\|3357...	254.0	[0..1]	[304..37]
gi\|25309326 - pir\|\|B98054 glycosil transferase (EC 2.4.1.-) [imported] - Streptococcus pneumoniae (strain R6) gi\|15459116, gi\|... - gi\|15903502\|ref\|NP_359052.1\| glycosil transferase [Streptococcus pneumoniae R6], gi\|15459116\|gb\|AAL0...	254.0	[0..1]	[304..47]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISLVVPVF NEEEAIPIFY KTVREFEELK SYEVEIVFIN DGSKDATESI INALAVSDPL  60
   61 VVPLSFTRNF GKEPALFAGL DHATGDAIIP IDVDLQDPIE VIPHLIEKWQ AGADMVLAKR 120
  121 SDRSTDGRLK RKTAEWFYKL HNKISNPKIE ENVGDFRLMS RDVVENIKLM PERNLFMKGI 180
  181 LSWVGGKTDI VEYVRAERIA GDTKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	2d7iA
Description:	No description for 2d7iA was found.

Predicted Domain #2

Region A:
Residues: [206-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGWKLWNLAL EGITSFSTFP LRIWTYIGLV VASVAFIYGA WMILDTIIFG NAVRGYPSLL  60
   61 VSILFLGGIQ MIGIGVLGEY IGRTYIETKK RPKYIIKRVK K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits