YRC Public Data Repository - Protein Structure Prediction

Protein:	RL33_CLAM3
Organism:	Clavibacter michiganensis subsp. michiganensis NCPPB 382
Length:	55 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL33_CLAM3.

Description	E-value	Query Range	Subject Range
RL33_BIFLO - 50S ribosomal protein L33 OS=Bifidobacterium longum GN=rpmG PE=3 SV=1 RL33_BIFLO - 50S ribosomal protein L33 OS=Bifidobacterium longum (strain NCC 2705) GN=rpmG PE=3 SV=1 gi\|23336434 - gi\|23336434\|ref\|ZP_00121652.1\| COG0267: Ribosomal protein L33 [Bifidobacterium longum DJO10A] gi\|227213107, gi... - gi\|227546450\|ref\|ZP_03976499.1\| ribosomal protein L33 [Bifidobacterium longum subsp. infantis ATCC 5... gi\|223466532, gi... - gi\|223466532\|ref\|ZP_03618068.1\| hypothetical protein BIFBRE_00234 [Bifidobacterium breve DSM 20213],...	78.0	[0..1]	[55..3]

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Predicted Domain #1

Region A:
Residues: [1-55]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKQQDVRPI IKLRSTAGTG YTYVTRKNRR NNPDRLVLKK YDPVVRKHVD FREER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.0
Match:	1nkw1
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits