YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|143811453
Organism:	Oryza sativa
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|143811453.

Description	E-value	Query Range	Subject Range
RRFC_SPIOL - Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1	270.0	[0..27]	[266..31]
RRF_COLP3 - Ribosome-recycling factor OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=frr PE=3 SV=1	270.0	[0..82]	[266..1]
RRF_ERWCT - Ribosome-recycling factor OS=Erwinia carotovora subsp. atroseptica GN=frr PE=3 SV=1 RRF_PECAS - Ribosome-recycling factor OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=frr PE...	269.0	[0..82]	[265..1]
RRF_VIBCH - Ribosome-recycling factor OS=Vibrio cholerae GN=frr PE=3 SV=1 RRF_VIBCM - Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain M66-2) GN=frr PE=3 SV=1 gi\|229507669, gi... - gi\|229507669\|ref\|ZP_04397174.1\| ribosome recycling factor [Vibrio cholerae BX 330286], gi\|229355174\|... gi\|254286071, gi... - gi\|254286071\|ref\|ZP_04961032.1\| ribosome recycling factor [Vibrio cholerae AM-19226], gi\|197752556\|r... gi\|229512136, gi... - gi\|229512136\|ref\|ZP_04401615.1\| ribosome recycling factor [Vibrio cholerae B33], gi\|229352101\|gb\|EEO... gi\|153827697, gi... - gi\|153827697\|ref\|ZP_01980364.1\| ribosome recycling factor [Vibrio cholerae MZO-2], gi\|149737829\|gb\|E... gi\|229343960, gi... - gi\|229519271\|ref\|ZP_04408714.1\| ribosome recycling factor [Vibrio cholerae RC9], gi\|229343960\|gb\|EEO... gi\|229522203, gi... - gi\|229522203\|ref\|ZP_04411620.1\| ribosome recycling factor [Vibrio cholerae TM 11079-80], gi\|22934112... gi\|229337841, gi... - gi\|229524260\|ref\|ZP_04413665.1\| ribosome recycling factor [Vibrio cholerae bv. albensis VL426], gi\|2... gi\|229528740, gi... - gi\|229528740\|ref\|ZP_04418130.1\| ribosome recycling factor [Vibrio cholerae 12129(1)], gi\|229332514\|g... gi\|229607173, gi... - gi\|229607173\|ref\|YP_002877821.1\| ribosome recycling factor [Vibrio cholerae MJ-1236], gi\|229369828\|g... gi\|254845092, gi... - gi\|254849387\|ref\|ZP_05238737.1\| ribosome recycling factor [Vibrio cholerae MO10], gi\|254845092\|gb\|EE... RRF_VIBC3 - Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / ... RRF_VIBCH - Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) G... gi\|153221229, gi... - gi\|153221229\|ref\|ZP_01952244.1\| ribosome recycling factor [Vibrio cholerae MAK 757], gi\|124119758\|gb... gi\|153803002, gi... - gi\|153803002\|ref\|ZP_01957588.1\| ribosome recycling factor [Vibrio cholerae MZO-3], gi\|124121445\|gb\|E...	268.0	[0..82]	[266..1]
RRF_PHOLL - Ribosome-recycling factor OS=Photorhabdus luminescens subsp. laumondii GN=frr PE=3 SV=1 RRF_PHOLL - Ribosome-recycling factor OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556...	268.0	[0..82]	[265..1]
RRF_DESHD - Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=frr PE=3 SV=...	268.0	[0..82]	[266..1]
RRF_LEGPA - Ribosome-recycling factor OS=Legionella pneumophila (strain Paris) GN=frr PE=3 SV=1	267.0	[0..82]	[266..1]
RRF_LEGPL - Ribosome-recycling factor OS=Legionella pneumophila (strain Lens) GN=frr PE=3 SV=1 RRF_LEGPC - Ribosome-recycling factor OS=Legionella pneumophila (strain Corby) GN=frr PE=3 SV=1 RRF_LEGPH - Ribosome-recycling factor OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC...	267.0	[0..82]	[266..1]
RRF_HISS2 - Ribosome-recycling factor OS=Histophilus somni (strain 2336) GN=frr PE=3 SV=1 RRF_HAES1 - Ribosome-recycling factor OS=Haemophilus somnus (strain 129Pt) GN=frr PE=3 SV=1	267.0	[0..82]	[264..1]
RRF_VIBF1 - Ribosome-recycling factor OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=frr PE=3 SV=1	266.0	[0..82]	[266..1]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPLHAVSPA AAAAPPRALS SAARVPQRPG CVPERPNILS SSTNFMSLRA GPMRFYSRPL  60
   61 ILQNSDKRAV LRHA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [75-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIEEIEAEKS VIEDQARERM EKAIETVQNN FNTVRTGRAN PAMLDRIEVE YYGTPVNLKS  60
   61 IAQINTPDAT SLLIQPYDKS SLKLIEKTIV AANLGVTPSN DGEVIRVTVP PLTSDRRKEL 120
  121 AKTVAKLAEE GKVAIRNIRR DAIKAYDKLE KEKKLSEDNV KDLSADLQKV TDEYMKKIEA 180
  181 IQKQKEQELM KI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.045757
Match:	1is1A
Description:	Ribosome recycling factor, RRF
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits