YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|148921710, gi...
Organism:	synthetic construct
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|148921710, gi....

Description	E-value	Query Range	Subject Range
gi\|109094686 - gi\|109094686\|ref\|XP_001116328.1\| PREDICTED: similar to adrenomedullin 2 precusor [Macaca mulatta]	3.0E-55	[1..148]	[1..148]
gi\|114687068, gi... - gi\|114687070\|ref\|XP_001141730.1\| PREDICTED: adrenomedullin 2 precusor isoform 2 [Pan troglodytes], g...	2.0E-54	[1..148]	[1..148]
ADM2_MOUSE - ADM2 OS=Mus musculus GN=Adm2 PE=2 SV=1	4.0E-52	[6..148]	[8..150]
ADM2_RAT - ADM2 OS=Rattus norvegicus GN=Adm2 PE=2 SV=1	3.0E-51	[6..148]	[8..146]
gi\|76617329 - gi\|76617329\|ref\|XP_876306.1\| PREDICTED: similar to adrenomedullin 2 [Bos taurus]	2.0E-39	[1..148]	[1..142]
gi\|73968835 - gi\|73968835\|ref\|XP_848492.1\| PREDICTED: similar to adrenomedullin 2 precusor [Canis familiaris]	7.0E-29	[1..148]	[119..260]
gi\|68358772 - gi\|68358772\|ref\|XP_695684.1\| PREDICTED: similar to intermedin precursor [Danio rerio]	2.0E-25	[11..148]	[11..154]
gi\|74095877, gi\|... - gi\|74095877\|ref\|NP_001027755.1\| adrenomedullin-2 [Takifugu rubripes], gi\|38524500\|dbj\|BAD02342.1\| ad...	2.0E-23	[72..148]	[85..168]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARIPTAALG CISLLCLQLP GSLSRSLGGD PRPVKPREPP ARSPSSSLQP RHPAPRPVVW  60
   61 KLHRALQAQR GAGLAPVMGQ PLRDGGRQHS GPRRHSGPRR TQAQLLRVGC VLGTCQVQNL 120
  121 SHRLWQLMGP AGRQDSAPVD PSSPHSYG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits