YRC Public Data Repository - Protein Structure Prediction

Protein:	GSPI_VIBCH
Organism:	Vibrio cholerae
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GSPI_VIBCH.

Description	E-value	Query Range	Subject Range
gi\|90437786, gi\|... - gi\|90581090\|ref\|ZP_01236890.1\| putative type II secretory pathway, pseudopilin EpsI [Vibrio angustum...	109.0	[0..1]	[117..1]
gi\|89049780, gi\|... - gi\|89074492\|ref\|ZP_01160969.1\| putative type II secretory pathway, pseudopilin EpsI [Photobacterium ...	108.0	[0..1]	[117..1]
gi\|37197142, gi\|... - gi\|37678403\|ref\|NP_933012.1\| type II secretory pathway, pseudopilin EpsI [Vibrio vulnificus YJ016], ...	107.0	[0..2]	[116..29]
gi\|93356169, gi\|... - gi\|94312317\|ref\|YP_585527.1\| general secretion pathway protein I [Ralstonia metallidurans CH34], gi\|...	102.0	[0..3]	[117..10]
gi\|27360438, gi\|... - gi\|27364320\|ref\|NP_759848.1\| Type II secretory pathway, pseudopilin EpsI [Vibrio vulnificus CMCP6], ...	100.0	[0..2]	[116..5]
gi\|59481177, gi\|... - gi\|59713076\|ref\|YP_205852.1\| general secretion pathway protein I [Vibrio fischeri ES114], gi\|5948117...	100.0	[0..5]	[116..12]
gi\|91224974, gi\|... - gi\|91224974\|ref\|ZP_01260233.1\| general secretion pathway protein I [Vibrio alginolyticus 12G01], gi\|...	100.0	[0..2]	[116..14]
GSPI_KLEPN - Type II secretion system protein I OS=Klebsiella pneumoniae GN=pulI PE=3 SV=1 gi\|96554, gi\|227578 - gi\|96554\|pir\|\|S11919 pulI protein - Klebsiella oxytoca, gi\|227578\|prf\|\|1707264C pulI gene	99.0	[0..1]	[117..1]
gi\|86146567, gi\|... - gi\|86146567\|ref\|ZP_01064889.1\| general secretion pathway protein I [Vibrio sp. MED222], gi\|85835624\|... gi\|218708204, gi... - gi\|218708204\|ref\|YP_002415825.1\| type II secretory pathway, pseudopilin EpsI [Vibrio splendidus LGP3...	99.0	[0..5]	[117..19]
gi\|84378758, gi\|... - gi\|84386334\|ref\|ZP_00989362.1\| general secretion pathway protein I [Vibrio splendidus 12B01], gi\|843...	99.0	[0..5]	[117..19]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSKRGFTLL EVLVALAIFA TAAISVIRSV SQHINTVNYL EEKMFAAMVV DNQMAQVMLN  60
   61 PQSLAAREGS EQMAGRTWYW KLSPVKTADN LLKAFDVSVA TEKGATPVVT VRSYVAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.522879
Match:	1ay2A
Description:	STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits