YRC Public Data Repository - Protein Structure Prediction

Protein:	GSPI_DICCH
Organism:	Erwinia chrysanthemi
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GSPI_DICCH.

Description	E-value	Query Range	Subject Range
gi\|68545426, gi\|... - gi\|68545426\|ref\|ZP_00584977.1\| General secretion pathway protein I [Shewanella amazonensis SB2B], gi...	108.0	[0..1]	[119..13]
gi\|71144971, gi\|... - gi\|71279231\|ref\|YP_271233.1\| general secretion pathway protein I [Colwellia psychrerythraea 34H], gi...	104.0	[0..2]	[119..7]
gi\|114332591, gi... - gi\|69951918\|ref\|ZP_00639530.1\| General secretion pathway protein I [Shewanella frigidimarina NCIMB 4...	101.0	[0..2]	[117..26]
gi\|82703017, gi\|... - gi\|82703017\|ref\|YP_412583.1\| general secretion pathway protein I [Nitrosospira multiformis ATCC 2519...	101.0	[0..2]	[124..11]
gi\|196158756, gi... - gi\|88792991\|ref\|ZP_01108708.1\| general secretion pathway protein I [Alteromonas macleodii 'Deep ecot...	100.0	[0..3]	[123..38]
gi\|126639837, gi... - gi\|78365999\|ref\|ZP_00836282.1\| General secretion pathway protein I [Shewanella sp. PV-4], gi\|7836190...	100.0	[0..2]	[121..15]
gi\|160873284, gi... - gi\|160873284\|ref\|YP_001552600.1\| general secretion pathway protein I [Shewanella baltica OS195], gi\|...	99.0	[0..2]	[119..3]
gi\|68520952, gi\|... - gi\|68541299\|ref\|ZP_00581044.1\| General secretion pathway protein I [Shewanella baltica OS155], gi\|68...	99.0	[0..2]	[119..3]
gi\|78689148, gi\|... - gi\|78689148\|ref\|ZP_00853813.1\| General secretion pathway protein I [Shewanella sp. MR-7], gi\|7851154... gi\|82495886, gi\|... - gi\|82495886\|ref\|ZP_00881459.1\| General secretion pathway protein I [Shewanella sp. MR-4], gi\|8240619...	99.0	[0..4]	[119..5]
gi\|91791495, gi\|... - gi\|91791495\|ref\|YP_561146.1\| general secretion pathway protein I [Shewanella denitrificans OS217], g...	99.0	[0..2]	[117..3]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQQGMTLLE VMVALVIFAL AGLTVLKTTA QQANGLGRLE EKTFALWIAE NQQAAMRLEK  60
   61 QWPQSQWVDG EVNFAGSLWF WRIQGIATAD TRVRAIDVEV RHDRDSRAAD AVLRSYLVQP 120
  121 GEPAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.30103
Match:	2hi2A
Description:	No description for 2hi2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits