YRC Public Data Repository - Protein Structure Prediction

Protein:	GSPI_ECOLI
Organism:	Escherichia coli
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GSPI_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|90437786, gi\|... - gi\|90581090\|ref\|ZP_01236890.1\| putative type II secretory pathway, pseudopilin EpsI [Vibrio angustum...	101.0	[0..1]	[118..1]
gi\|68545426, gi\|... - gi\|68545426\|ref\|ZP_00584977.1\| General secretion pathway protein I [Shewanella amazonensis SB2B], gi...	101.0	[0..3]	[120..14]
gi\|89049780, gi\|... - gi\|89074492\|ref\|ZP_01160969.1\| putative type II secretory pathway, pseudopilin EpsI [Photobacterium ...	100.0	[0..1]	[118..1]
gi\|91791495, gi\|... - gi\|91791495\|ref\|YP_561146.1\| general secretion pathway protein I [Shewanella denitrificans OS217], g...	100.0	[0..1]	[118..1]
gi\|160873284, gi... - gi\|160873284\|ref\|YP_001552600.1\| general secretion pathway protein I [Shewanella baltica OS195], gi\|...	99.0	[0..1]	[120..1]
gi\|68520952, gi\|... - gi\|68541299\|ref\|ZP_00581044.1\| General secretion pathway protein I [Shewanella baltica OS155], gi\|68...	99.0	[0..1]	[120..1]
gi\|71144971, gi\|... - gi\|71279231\|ref\|YP_271233.1\| general secretion pathway protein I [Colwellia psychrerythraea 34H], gi...	99.0	[0..3]	[118..7]
gi\|77359208, gi\|... - gi\|77359208\|ref\|YP_338783.1\| general secretion pathway protein I [Pseudoalteromonas haloplanktis TAC...	99.0	[0..1]	[119..1]
gi\|37197142, gi\|... - gi\|37678403\|ref\|NP_933012.1\| type II secretory pathway, pseudopilin EpsI [Vibrio vulnificus YJ016], ...	99.0	[0..2]	[118..29]
gi\|117610946, gi... - gi\|78685481\|ref\|ZP_00850259.1\| General secretion pathway protein I [Shewanella sp. ANA-3], gi\|785068...	99.0	[0..1]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKQSGMTLL EVLLAMSIFT AVALTLMSSM QGQRNAIERM RNETLALWIA DNQLQSQDSF  60
   61 GEENTSSSGK ELINGEEWNW RSDIHSSKDG TLLERTITVT LPSGQTTSLT RYQSIDNKSG 120
  121 QAQDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.221849
Match:	1ay2A
Description:	STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits