YRC Public Data Repository - Protein Structure Prediction

Protein:	GSPG_AERHY
Organism:	Aeromonas hydrophila
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GSPG_AERHY.

Description	E-value	Query Range	Subject Range
gi\|117918612, gi... - gi\|78685479\|ref\|ZP_00850257.1\| General secretion pathway protein G [Shewanella sp. ANA-3], gi\|785068...	175.0	[0..2]	[143..3]
gi\|82406189, gi\|... - gi\|82495884\|ref\|ZP_00881457.1\| General secretion pathway protein G [Shewanella sp. MR-4], gi\|8240618... gi\|113887109, gi... - gi\|78689146\|ref\|ZP_00853811.1\| General secretion pathway protein G [Shewanella sp. MR-7], gi\|7851154...	174.0	[0..2]	[143..3]
gi\|160858804, gi... - gi\|160873282\|ref\|YP_001552598.1\| general secretion pathway protein G [Shewanella baltica OS195], gi\|... gi\|217496504, gi... - gi\|217971369\|ref\|YP_002356120.1\| general secretion pathway protein G [Shewanella baltica OS223], gi\|...	173.0	[0..2]	[143..3]
gi\|78701109, gi\|... - gi\|78701109\|ref\|ZP_00865562.1\| General secretion pathway protein G [Alkalilimnicola ehrlichei MLHE-1...	173.0	[0..1]	[140..2]
gi\|126639839, gi... - gi\|78366001\|ref\|ZP_00836284.1\| General secretion pathway protein G [Shewanella sp. PV-4], gi\|7836190...	173.0	[0..3]	[143..4]
gi\|114332589, gi... - gi\|69951920\|ref\|ZP_00639532.1\| General secretion pathway protein G [Shewanella frigidimarina NCIMB 4...	173.0	[0..2]	[143..3]
gi\|188015146, gi... - gi\|188015146\|gb\|EDU53268.1\| general secretion pathway protein G [Escherichia coli O157:H7 str. EC411... gi\|217317112, gi... - gi\|217329881\|ref\|ZP_03445956.1\| general secretion pathway protein G [Escherichia coli O157:H7 str. T... gi\|254667454, gi... - gi\|254667454\|ref\|YP_003082140.1\| type II secretion protein [Escherichia coli O157:H7 str. TW14359], ... gi\|75994482 - gi\|75994482\|ref\|YP_325596.1\| type II secretion protein [Escherichia coli O157:H7 EDL933] gi\|208811373, gi... - gi\|208811373\|ref\|ZP_03253133.1\| general secretion pathway protein G [Escherichia coli O157:H7 str. E... gi\|3337003, gi\|1... - gi\|3337003\|dbj\|BAA31762.1\| Type II secretion pathway related protein [Escherichia coli O157:H7 str. ... gi\|208730575, gi... - gi\|208817398\|ref\|ZP_03258427.1\| general secretion pathway protein G [Escherichia coli O157:H7 str. E... gi\|208823360, gi... - gi\|208823360\|ref\|ZP_03263677.1\| general secretion pathway protein G [Escherichia coli O157:H7 str. E... gi\|209395575, gi... - gi\|209395575\|ref\|YP_002268501.1\| general secretion pathway protein G [Escherichia coli O157:H7 str. ... gi\|168783065, gi... - gi\|188999578\|gb\|EDU68564.1\| general secretion pathway protein G [Escherichia coli O157:H7 str. EC407... gi\|75994482, gi\|... - gi\|75994482\|ref\|YP_325596.1\| type II secretion protein [Escherichia coli O157:H7], gi\|3822150\|gb\|AAC... gi\|168789909, gi... - gi\|189370534\|gb\|EDU88950.1\| general secretion pathway protein G [Escherichia coli O157:H7 str. EC869... gi\|149930767, gi... - pir\|\|T00215 type II secretion pathway related protein etpG - Escherichia coli plasmid pO157, gi\|376... gi\|189375478, gi... - gi\|189375478\|gb\|EDU93894.1\| general secretion pathway protein G [Escherichia coli O157:H7 str. EC508... gi\|195940095 - gi\|195940095\|ref\|ZP_03085477.1\| EtpG [Escherichia coli O157:H7 str. EC4024] gi\|168757326, gi... - gi\|189355679\|gb\|EDU74098.1\| general secretion pathway protein G [Escherichia coli O157:H7 str. EC440... gi\|189366776, gi... - gi\|189366776\|gb\|EDU85192.1\| general secretion pathway protein G [Escherichia coli O157:H7 str. EC450... gi\|189361683, gi... - gi\|189361683\|gb\|EDU80102.1\| general secretion pathway protein G [Escherichia coli O157:H7 str. EC448... gi\|187767935, gi... - gi\|187767935\|gb\|EDU31779.1\| general secretion pathway protein G [Escherichia coli O157:H7 str. EC419...	173.0	[0..1]	[143..1]
gi\|68541301, gi\|... - gi\|68541301\|ref\|ZP_00581046.1\| General secretion pathway protein G [Shewanella baltica OS155], gi\|68...	173.0	[0..2]	[143..3]
gi\|124508691, gi... - gi\|124548115\|ref\|ZP_01706881.1\| general secretion pathway protein G [Shewanella putrefaciens 200], g... gi\|120600490, gi... - gi\|82741859\|ref\|ZP_00904570.1\| General secretion pathway protein G [Shewanella sp. W3-18-1], gi\|8272...	172.0	[0..3]	[143..4]
gi\|77811490, gi\|... - gi\|77813399\|ref\|ZP_00812674.1\| General secretion pathway protein G [Shewanella putrefaciens CN-32], ...	172.0	[0..4]	[143..5]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKRRQSGFT LLEVMVVIVI LGILASLVVP NLMGNKEKAD QQKAVSDIVA LENALDMYKL  60
   61 DNNRYPTTEQ GLDALVNKPT AAPEPRSYRD GGYIKRLPQD PWGNPYQMLS PGQFGKIDIF 120
  121 SMGLDGEAGT DDDIGNWNLK DFQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.522879
Match:	1t92A
Description:	Crystal structure of N-terminal truncated pseudopilin PulG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits