YRC Public Data Repository - Protein Structure Prediction

Protein:	GSPF_ECOLI
Organism:	Escherichia coli
Length:	398 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GSPF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|94805, gi\|151066 - pir\|\|B35384 pilC protein - Pseudomonas aeruginosa, gi\|151066\|gb\|AAA25733.1\| pilin biogenesis protei...	394.0	[0..3]	[397..11]
gi\|68213835, gi\|... - gi\|91776494\|ref\|YP_546250.1\| type II secretion system protein [Methylobacillus flagellatus KT], gi\|9...	391.0	[0..1]	[397..9]
gi\|88701939, gi\|... - gi\|88704112\|ref\|ZP_01101827.1\| general secretory pathway protein F [gamma proteobacterium KT 71], gi...	388.0	[0..3]	[397..10]
gi\|83647943, gi\|... - gi\|83647943\|ref\|YP_436378.1\| Type II secretory pathway, component PulF [Hahella chejuensis KCTC 2396...	388.0	[0..2]	[397..10]
gi\|77461042, gi\|... - gi\|77461042\|ref\|YP_350549.1\| type II secretion system protein [Pseudomonas fluorescens Pf0-1], gi\|77...	386.0	[0..3]	[397..11]
gi\|66044052, gi\|... - gi\|66044052\|ref\|YP_233893.1\| type II secretion system protein [Pseudomonas syringae pv. syringae B72...	386.0	[0..3]	[397..11]
gi\|28868145, gi\|... - gi\|28868145\|ref\|NP_790764.1\| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. tomato ... tr\|Q888U1\|Q888U1... - Type IV pilus biogenesis protein PilC OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=pilC PE=...	386.0	[0..3]	[397..11]
gi\|71734826, gi\|... - gi\|71734826\|ref\|YP_273101.1\| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. phaseol...	385.0	[0..3]	[397..11]
gi\|34499282, gi\|... - gi\|34499282\|ref\|NP_903497.1\| fimbrial assembly transmembrane protein [Chromobacterium violaceum ATCC...	384.0	[0..3]	[397..15]
gi\|126176110, gi... - gi\|68543122\|ref\|ZP_00582837.1\| type II secretion system protein [Shewanella baltica OS155], gi\|68519...	382.0	[0..2]	[398..25]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYRYRAMTQ DGQKLQGIID ANDERQARLR LREEGLFLLD IRPQKSSGVK TRRPRISHSE  60
   61 LTLFTRQLAT LSAAALPLEE SLAVIGQQSS NKRLGDVLNQ VRSAILEGHP LSDALQHFPT 120
  121 LFDSLYRTLV KAGEKSGLLA PVLEKLADYN ENRQKIRSKL IQSLIYPCML TTVAIGVVII 180
  181 LLTAVVPKIT EQFVHMKQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.49485
Match:	PF00482.14
Description:	No description for PF00482.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [200-398]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPLSTRILLG LSDTLQRTGP TLLATVFIVA VGFWLWLKRG NNRHRFHAML LRVALIGPLI  60
   61 CAINSARYLR TLSILQSSGV PLLDGMNLST ESLNNLEIRQ RLANAAENVR QGNSIHLSLE 120
  121 QTAIFPPMML YMVASGEKSG QLGTLMVRAA DNQETLQQNR IALTLSIFEP ALIITMALIV 180
  181 LFIVVSVLQP LLQLNSMIN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	17.107905
Match:	PF00482.14
Description:	No description for PF00482.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits