YRC Public Data Repository - Protein Structure Prediction

Protein:	GSPA_ECOLI
Organism:	Escherichia coli
Length:	489 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GSPA_ECOLI.

Description	E-value	Query Range	Subject Range
GSPA_AERHY - General secretion pathway protein A OS=Aeromonas hydrophila GN=exeA PE=3 SV=1	186.0	[0..1]	[485..24]
gi\|24372876, gi\|... - gi\|24372876\|ref\|NP_716918.1\| general secretion pathway protein a [Shewanella oneidensis MR-1], gi\|24... SO1297 - general secretion pathway protein a	179.0	[0..1]	[481..24]
gi\|68517651, gi\|... - gi\|68544647\|ref\|ZP_00584271.1\| ATPas [Shewanella baltica OS155], gi\|68517651\|gb\|EAN41288.1\| ATPas [S...	178.0	[0..1]	[481..24]
gi\|160874352, gi... - gi\|160874352\|ref\|YP_001553668.1\| peptidoglycan binding domain-containing protein [Shewanella baltica...	178.0	[0..1]	[481..24]
gi\|113889911, gi... - gi\|78691450\|ref\|ZP_00856066.1\| ATPas [Shewanella sp. MR-7], gi\|78509160\|gb\|EAP22566.1\| ATPas [Shewan...	178.0	[0..1]	[481..24]
gi\|82497624, gi\|... - gi\|82497624\|ref\|ZP_00883155.1\| ATPas [Shewanella sp. MR-4], gi\|82404359\|gb\|EAP45049.1\| ATPas [Shewan...	177.0	[0..1]	[481..24]
gi\|90311654, gi\|... - gi\|90407231\|ref\|ZP_01215418.1\| general secretion pathway protein a [Psychromonas sp. CNPT3], gi\|9031...	177.0	[0..1]	[476..24]
gi\|117921513, gi... - gi\|78687545\|ref\|ZP_00852290.1\| ATPas [Shewanella sp. ANA-3], gi\|78504689\|gb\|EAP18237.1\| ATPas [Shewa...	175.0	[0..1]	[481..24]
gi\|124508784, gi... - gi\|124547951\|ref\|ZP_01706747.1\| Peptidoglycan-binding domain 1 [Shewanella putrefaciens 200], gi\|124... gi\|145563909, gi... - gi\|77815885\|ref\|ZP_00815101.1\| ATPas [Shewanella putrefaciens CN-32], gi\|77809167\|gb\|EAO93573.1\| ATP...	175.0	[0..1]	[477..24]
gi\|120559938, gi... - gi\|82740798\|ref\|ZP_00903533.1\| ATPas [Shewanella sp. W3-18-1], gi\|82721902\|gb\|EAP56733.1\| ATPas [She...	175.0	[0..1]	[477..24]

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Predicted Domain #1

Region A:
Residues: [1-489]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTRREVILS WLCEKRQTWR LCYLLGEAGS GKTWLAQQLQ KDKHRRVITL SLVVSWQGKA  60
   61 AWIVTDDNAA EQGCRDSAWT RDEMAGQLLH ALHRTDSRCP LIIIENAHLN HRRILDDLQR 120
  121 AISLIPDGQF LLIGRPDRKV ERDFKKQGIE LVSIGRLTEH ELKASILEGQ NIDQPDLLLT 180
  181 ARVLKRIALL CRGDRRKLAL AGETIRLLQQ AEQTSVFTAK QWRMIYRILG DNRPRKMQLA 240
  241 VVMSGTIIAL TCGWLLLSSF TATLPVPAWL IPVTPVVKQD MTKDIAHVVM RDSEALSVLY 300
  301 GVWGYEVPAD SAWCDQAVRA GLACKSGNAS LQTLVDQNLP WIASLKVGDK KLPVVVVRVG 360
  361 EASVDVLVGQ QTWTLTHKWF ESVWTGDYLL LWKMSPEGES TITRDSSEEE ILWLETMLNR 420
  421 ALHISTEPSA EWRPLLVEKI KQFQKSHHLK TDGVVGFSTL VHLWQVAGES AYLYRDEANI 480
  481 SPETTVKGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.30103
Match:	1qvrA
Description:	Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.470983068319171	bayes_pls_golite062009
hydrolase activity	0.0582794297634999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: