YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149290355, gi...
Organism:	Yersinia pestis CA88-4125
Length:	456 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149290355, gi....

Description	E-value	Query Range	Subject Range
gi\|167055499, gi... - gi\|167425485\|ref\|ZP_02317238.1\| UDP-N-acetylglucosamine pyrophosphorylase [Yersinia pestis biovar Me... gi\|167401598, gi... - gi\|167401598\|ref\|ZP_02307092.1\| UDP-N-acetylglucosamine pyrophosphorylase [Yersinia pestis biovar An... gi\|166958254, gi... - gi\|167422862\|ref\|ZP_02314615.1\| UDP-N-acetylglucosamine pyrophosphorylase [Yersinia pestis biovar Or... gi\|165991421, gi... - gi\|166009499\|ref\|ZP_02230397.1\| UDP-N-acetylglucosamine pyrophosphorylase [Yersinia pestis biovar An... gi\|166213193, gi... - gi\|166213193\|ref\|ZP_02239228.1\| UDP-N-acetylglucosamine pyrophosphorylase [Yersinia pestis biovar An... gi\|165926087, gi... - gi\|165926087\|ref\|ZP_02221919.1\| UDP-N-acetylglucosamine pyrophosphorylase [Yersinia pestis biovar Or... gi\|165939981, gi... - gi\|165939981\|ref\|ZP_02228518.1\| UDP-N-acetylglucosamine pyrophosphorylase [Yersinia pestis biovar Or... gi\|21961148, gi\|... - gi\|22128001\|ref\|NP_671424.1\| bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosam... gi\|45443749, gi\|... - gi\|45443749\|ref\|NP_995288.1\| bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosam... gi\|162351013, gi... - gi\|162418198\|ref\|YP_001608470.1\| bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/gluc...	1.0E-77	[1..456]	[3..458]
GLMU_SALTY - Bifunctional protein GlmU OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=glmU PE... GLMU_SALTY - Bifunctional protein glmU OS=Salmonella typhimurium GN=glmU PE=3 SV=1 gi\|195632226, gi... - gi\|195632226\|gb\|EDX50710.1\| UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyl... GLMU_SALHS - Bifunctional protein GlmU OS=Salmonella heidelberg (strain SL476) GN=glmU PE=3 SV=1 gi\|167995196, gi... - gi\|205327084\|gb\|EDZ13848.1\| UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyl... gi\|205336006, gi... - gi\|205336006\|gb\|EDZ22770.1\| UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyl... GLMU_SALTY - Bifunctional protein GlmU OS=Salmonella typhimurium GN=glmU PE=3 SV=1 lcl\|NC_016856.1_... - [gene=glmU] [protein=bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-ph...	4.0E-76	[1..456]	[1..456]
GLMU_SALCH - Bifunctional protein glmU OS=Salmonella choleraesuis GN=glmU PE=3 SV=1 GLMU_SALCH - Bifunctional protein GlmU OS=Salmonella choleraesuis (strain SC-B67) GN=glmU PE=3 SV=1 GLMU_SALCH - Bifunctional protein GlmU OS=Salmonella choleraesuis GN=glmU PE=3 SV=1	8.0E-76	[1..456]	[1..456]
GLMU_SALTI - Bifunctional protein glmU OS=Salmonella typhi GN=glmU PE=3 SV=1 GLMU_SALTI - Bifunctional protein GlmU OS=Salmonella typhi GN=glmU PE=3 SV=1 gi\|213646875 - gi\|213646875\|ref\|ZP_03376928.1\| bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/gluco... gi\|29139588, gi\|... - gi\|29143952\|ref\|NP_807294.1\| bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosam... gi\|213427473 - gi\|213427473\|ref\|ZP_03360223.1\| bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/gluco... gi\|213052672 - gi\|213052672\|ref\|ZP_03345550.1\| bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/gluco... gi\|16762464 - gi\|16762464\|ref\|NP_458081.1\| bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosam... gi\|214001321 - gi\|214001321\|ref\|ZP_03412056.1\| bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/gluco... gi\|213852798 - gi\|213852798\|ref\|ZP_03382330.1\| bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/gluco...	1.0E-75	[1..456]	[1..456]
gi\|77634107 - gi\|77634107\|ref\|ZP_00796215.1\| COG1207: N-acetylglucosamine-1-phosphate uridyltransferase (contains ... gi\|89104506 - gi\|89104506\|ref\|ZP_01177047.1\| COG1207: N-acetylglucosamine-1-phosphate uridyltransferase (contains ... gi\|77630940, gi\|... - gi\|77630940\|ref\|ZP_00793526.1\| COG1207: N-acetylglucosamine-1-phosphate uridyltransferase (contains ...	2.0E-75	[6..456]	[1..451]
GLMU_SALPA - Bifunctional protein GlmU OS=Salmonella paratyphi A GN=glmU PE=3 SV=1 GLMU_SALPK - Bifunctional protein GlmU OS=Salmonella paratyphi A (strain AKU_12601) GN=glmU PE=3 SV=1 GLMU_SALPA - Bifunctional protein GlmU OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=glmU PE=3 SV=1	3.0E-75	[1..456]	[1..456]
gi\|25317116 - gi\|25317116\|pir\|\|A86059 hypothetical protein glmU [imported] - Escherichia coli (strain O157:H7, su... gi\|12518587, gi\|... - gi\|15804330\|ref\|NP_290369.1\| bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosam...	6.0E-75	[1..456]	[1..456]
GLMU_SHISS - Bifunctional protein GlmU OS=Shigella sonnei (strain Ss046) GN=glmU PE=3 SV=1	8.0E-75	[1..456]	[1..456]
gi\|24115033, gi\|... - gi\|24115033\|ref\|NP_709543.1\| bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosam... gi\|30043226, gi\|... - gi\|30064965\|ref\|NP_839136.1\| bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosam... GLMU_SHIFL - Bifunctional protein GlmU OS=Shigella flexneri GN=glmU PE=3 SV=1 GLMU_SHIF8 - Bifunctional protein GlmU OS=Shigella flexneri serotype 5b (strain 8401) GN=glmU PE=3 SV=1	1.0E-74	[1..456]	[1..456]
GLMU_ECOUT - Bifunctional protein GlmU OS=Escherichia coli (strain UTI89 / UPEC) GN=glmU PE=3 SV=1 GLMU_ECOK1 - Bifunctional protein GlmU OS=Escherichia coli O1:K1 / APEC GN=glmU PE=3 SV=1 GLMU_ECO45 - Bifunctional protein GlmU OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=glmU PE=3 SV=1 gi\|237703531, gi... - gi\|237703531\|ref\|ZP_04534012.1\| glmU [Escherichia sp. 3_2_53FAA], gi\|226902795\|gb\|EEH89054.1\| glmU [...	1.0E-74	[1..456]	[1..456]

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Predicted Domain #1

Region A:
Residues: [1-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSSMSVVI LAAGKGTRMY SDLPKVLHPL AGKPMVQHVI DAAMKLGAQH VHLVYGHGGE  60
   61 LLKKTLADPS LNWVLQAEQL GTGHAMQQAA PHFADDEDIL MLYGDVPLIS VDTLQRLLAA 120
  121 KPEGGIGLLT VKLDNPSGYG RIVRENGDVV GIVEHKDASD AQREINEINT GILVANGRDL 180
  181 KRWLSLLDNN NAQGEFYITD IIALAHADGK KIATVHPTRL SEVEGVNNRL QLSALERVFQ 240
  241 TEQAEKLLLA GVMLLDPSRF DLRGELTHGR DITIDTNVII EGHVILGDRV RIGTGCVLKN 300
  301 CVIGDDSEIS PYTVLEDARL DANCTVGPFA RLRPGAELAE GAHVGNFVEI KKARLGKGSK 360
  361 AGHLSYLGDA EIGAGVNIGA GTITCNYDGA NKFKTIIGDD VFVGSDTQLV APVTVANGAT 420
  421 IGAGTTVTRD VAENELVISR VKQVHIQGWK RPVKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.221849
Match:	1hv9A
Description:	N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain; N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity	4.85526297527966	bayes_pls_golite062009
O-acyltransferase activity	4.84577168407664	bayes_pls_golite062009
uridylyltransferase activity	2.78377598963895	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.55498472336996	bayes_pls_golite062009
UDP-glycosyltransferase activity	2.14294822366154	bayes_pls_golite062009
UTP:glucose-1-phosphate uridylyltransferase activity	2.04683358427931	bayes_pls_golite062009
UTP-monosaccharide-1-phosphate uridylyltransferase activity	1.90086040617591	bayes_pls_golite062009
catalytic activity	1.88676710996045	bayes_pls_golite062009
transferase activity	1.47184463413038	bayes_pls_golite062009
nucleotidyltransferase activity	1.17054423506287	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	1.09519444695756	bayes_pls_golite062009
cytidylyltransferase activity	0.983416157001861	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.897978517422275	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	0.857216989692536	bayes_pls_golite062009
mannosyltransferase activity	0.64885729959093	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.521566400238457	bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity	0.513376694534047	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.2363835251362	bayes_pls_golite062009
guanylyltransferase activity	0.0539392112504681	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: