YRC Public Data Repository - Protein Structure Prediction

Protein:	GRPE_BARHE
Organism:	Bartonella henselae
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRPE_BARHE.

Description	E-value	Query Range	Subject Range
gi\|189023421, gi... - gi\|189023421\|ref\|YP_001934189.1\| GrpE protein [Brucella abortus S19], gi\|189018993\|gb\|ACD71715.1\| Gr... gi\|254694961 - gi\|254694961\|ref\|ZP_05156789.1\| heat shock protein GrpE [Brucella abortus bv. 3 str. Tulya] gi\|254696592 - gi\|254696592\|ref\|ZP_05158420.1\| heat shock protein GrpE [Brucella abortus bv. 2 str. 86/8/59] gi\|237814640, gi... - gi\|237814640\|ref\|ZP_04593638.1\| Protein grpE [Brucella abortus str. 2308 A], gi\|237789477\|gb\|EEP6368... gi\|254690472 - gi\|254690472\|ref\|ZP_05153726.1\| heat shock protein GrpE [Brucella abortus bv. 6 str. 870] gi\|254731505 - gi\|254731505\|ref\|ZP_05190083.1\| heat shock protein GrpE [Brucella abortus bv. 4 str. 292] GRPE_BRUME - Protein GrpE OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=grpE PE=3 SV... gi\|82699086 - gi\|82699086\|ref\|YP_413660.1\| GrpE protein [Brucella melitensis biovar Abortus 2308] GRPE_BRUME - Protein grpE OS=Brucella melitensis GN=grpE PE=3 SV=2 gi\|82615187 - gi\|82615187\|emb\|CAJ10126.1\| GrpE protein [Brucella melitensis biovar Abortus 2308] gi\|62195279, gi\|... - gi\|62289147\|ref\|YP_220940.1\| GrpE, heat shock protein [Brucella abortus bv. 1 str. 9-941], gi\|621952...	197.0	[0..1]	[219..1]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEKNKFTD ASFENCDLKN PSDRDALKQA ADKFLKAHAA EADADVKGGG EALVDPLAAL  60
   61 QDENKELKDQ LLRLAADMEN LRRRTARDVA DAKAYSIANF ARDMLSVSDN LNRALDAIPE 120
  121 GAKENDAGLK TLAEGVEMTE RAMIAALERH GVQKIHPEGQ KFDPHFHQAM FEIPNSDVPD 180
  181 NTVQQVVQAG YIIGERVLRP AIVGVAKGGA KDISVESDSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	1dkgA
Description:	Head domain of nucleotide exchange factor GrpE; Coiled-coil domain of nucleotide exchange factor GrpE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits