| Protein: | gi|157170322, gi... |
| Organism: | synthetic construct |
| Length: | 780 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157170322, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..780] | [1..780] |
|
|
0.0 | [1..780] | [1..780] |
|
|
0.0 | [1..780] | [1..780] |
|
|
0.0 | [1..773] | [1..776] |
|
|
0.0 | [1..780] | [1..780] |
|
|
0.0 | [1..780] | [1..780] |
|
|
0.0 | [1..779] | [1..779] |
|
|
0.0 | [9..745] | [5..729] |
|
Region A: Residues: [1-110] |
1 11 21 31 41 51
| | | | | |
1 MAAPGGRSEP PQLPEYSCSY MVSRPVYSEL AFQQQHERRL QERKTLRESL AKCCSCSRKR 60
61 AFGVLKTLVP ILEWLPKYRV KEWLLSDVIS GVSTGLVATL QGMAYALLAA
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [111-377] |
1 11 21 31 41 51
| | | | | |
1 VPVGYGLYSA FFPILTYFIF GTSRHISVGP FPVVSLMVGS VVLSMAPDEH FLVSSSNGTV 60
61 LNTTMIDTAA RDTARVLIAS ALTLLVGIIQ LIFGGLQIGF IVRYLADPLV GGFTTAAAFQ 120
121 VLVSQLKIVL NVSTKNYNGV LSIIYTLVEI FQNIGDTNLA DFTAGLLTIV VCMAVKELND 180
181 RFRHKIPVPI PIEVIVTIIA TAISYGANLE KNYNAGIVKS IPRGFLPPEL PPVSLFSEML 240
241 AASFSIAVVA YAIAVSVGKV YATKYDY
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 1fftA |
| Description: | Cytochrome O ubiquinol oxidase, subunit I |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [378-514] |
1 11 21 31 41 51
| | | | | |
1 TIDGNQEFIA FGISNIFSGF FSCFVATTAL SRTAVQESTG GKTQVAGIIS AAIVMIAILA 60
61 LGKLLEPLQK SVLAAVVIAN LKGMFMQLCD IPRLWRQNKI DAVIWVFTCI VSIILGLDLG 120
121 LLAGLIFGLL TVVLRVQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [515-644] |
1 11 21 31 41 51
| | | | | |
1 FPSWNGLGSI PSTDIYKSTK NYKNIEEPQG VKILRFSSPI FYGNVDGFKK CIKSTVGFDA 60
61 IRVYNKRLKA LRKIQKLIKS GQLRATKNGI ISDAVSTNNA FEPDEDIEDL EELDIPTKEI 120
121 EIQVDWNSEL
|
| Detection Method: | |
| Confidence: | 2.03 |
| Match: | 1auzA |
| Description: | SOLUTION STRUCTURE OF SPOIIAA, A PHOSPHORYLATABLE COMPONENT OF THE SYSTEM THAT REGULATES TRANSCRIPTION FACTOR SIGMA-F OF BACILLUS SUBTILIS, NMR, 24 STRUCTURES |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.14643407404573 | bayes_pls_golite062009 |
| protein binding | 1.48694301635456 | bayes_pls_golite062009 |
|
Region A: Residues: [645-780] |
1 11 21 31 41 51
| | | | | |
1 PVKVNVPKVP IHSLVLDCGA ISFLDVVGVR SLRVIVKEFQ RIDVNVYFAS LQDYVIEKLE 60
61 QCGFFDDNIR KDTFFLTVHD AILYLQNQVK SQEGQGSILE TITLIQDCKD TLELIETELT 120
121 EEELDVQDEA MRTLAS
|
| Detection Method: | |
| Confidence: | 3.09691 |
| Match: | 1auzA |
| Description: | SOLUTION STRUCTURE OF SPOIIAA, A PHOSPHORYLATABLE COMPONENT OF THE SYSTEM THAT REGULATES TRANSCRIPTION FACTOR SIGMA-F OF BACILLUS SUBTILIS, NMR, 24 STRUCTURES |
| Matching Structure (courtesy of the PDB): |
|
