YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153839206, gi...
Organism:	Vibrio parahaemolyticus AQ3810
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153839206, gi....

Description	E-value	Query Range	Subject Range
gi\|118652866, gi... - gi\|170733460\|ref\|YP_001765407.1\| cell division protein FtsB [Burkholderia cenocepacia MC0-3], gi\|169... gi\|116648216, gi... - gi\|67666377\|ref\|ZP_00463626.1\| Septum formation initiator [Burkholderia cenocepacia HI2424], gi\|6710... gi\|107028714, gi... - gi\|67657012\|ref\|ZP_00454392.1\| Septum formation initiator [Burkholderia cenocepacia AU 1054], gi\|670...	124.0	[0..1]	[93..1]
gi\|83623652, gi\|... - gi\|83623652\|ref\|ZP_00933917.1\| COG2919: Septum formation initiator [Burkholderia mallei JHU], gi\|254... gi\|134250655, gi... - gi\|134277005\|ref\|ZP_01763720.1\| septum formation initiator domain protein [Burkholderia pseudomallei... gi\|83679487, gi\|... - gi\|83679487\|ref\|ZP_00941200.1\| COG2919: Septum formation initiator [Burkholderia pseudomallei 406e],... gi\|82536727, gi\|... - gi\|82536727\|ref\|ZP_00895730.1\| hypothetical protein Bpse110_02001946 [Burkholderia pseudomallei 1106... gi\|254200263, gi... - gi\|83618746\|ref\|ZP_00929198.1\| COG2919: Septum formation initiator [Burkholderia mallei FMH], gi\|254... gi\|126451167, gi... - gi\|67646760\|ref\|ZP_00445013.1\| COG2919: Septum formation initiator [Burkholderia mallei NCTC 10247],... gi\|99909869, gi\|... - gi\|99909869\|ref\|ZP_01316967.1\| hypothetical protein Bpse1_03003656 [Burkholderia pseudomallei 1655],... gi\|67634802, gi\|... - gi\|67634802\|ref\|ZP_00433768.1\| COG2919: Septum formation initiator [Burkholderia mallei 10399], gi\|1... gi\|67642980, gi\|... - gi\|67642980\|ref\|ZP_00441730.1\| septum formation initiator family protein [Burkholderia mallei GB8 ho... gi\|82531608, gi\|... - gi\|82531608\|ref\|ZP_00890825.1\| COG2919: Septum formation initiator [Burkholderia pseudomallei 1106a]... gi\|167739318 - gi\|167739318\|ref\|ZP_02412092.1\| cell divison protein FtsB [Burkholderia pseudomallei 14] gi\|225929020, gi... - gi\|226198920\|ref\|ZP_03794483.1\| septum formation initiator domain protein [Burkholderia pseudomallei... gi\|167816534 - gi\|167816534\|ref\|ZP_02448214.1\| cell divison protein FtsB [Burkholderia pseudomallei 91] gi\|243062454, gi... - gi\|243062454\|gb\|EES44640.1\| septum formation initiator family protein [Burkholderia mallei PRL-20], ... gi\|167720324 - gi\|167720324\|ref\|ZP_02403560.1\| cell divison protein FtsB [Burkholderia pseudomallei DM98] gi\|237502783, gi... - gi\|237812995\|ref\|YP_002897446.1\| cell divison protein FtsB [Burkholderia pseudomallei MSHR346], gi\|2... gi\|167895024 - gi\|167895024\|ref\|ZP_02482426.1\| cell divison protein FtsB [Burkholderia pseudomallei 7894] gi\|167903408 - gi\|167903408\|ref\|ZP_02490613.1\| cell divison protein FtsB [Burkholderia pseudomallei NCTC 13177] gi\|167824929 - gi\|167824929\|ref\|ZP_02456400.1\| cell divison protein FtsB [Burkholderia pseudomallei 9] gi\|167846445 - gi\|167846445\|ref\|ZP_02471953.1\| cell divison protein FtsB [Burkholderia pseudomallei B7210] gi\|52210293, gi\|... - gi\|53719879\|ref\|YP_108865.1\| cell division protein FtsB [Burkholderia pseudomallei K96243], gi\|52210... gi\|52427206, gi\|... - gi\|53723783\|ref\|YP_103308.1\| cell division protein FtsB [Burkholderia mallei ATCC 23344], gi\|5242720... gi\|84522301, gi\|... - gi\|84522301\|ref\|ZP_01009437.1\| COG2919: Septum formation initiator [Burkholderia mallei SAVP1], gi\|1... gi\|217420905, gi... - gi\|217420905\|ref\|ZP_03452410.1\| septum formation initiator domain protein [Burkholderia pseudomallei... gi\|254191420, gi... - gi\|67754307\|ref\|ZP_00493218.1\| COG2919: Septum formation initiator [Burkholderia pseudomallei Pasteu... gi\|124386271, gi... - gi\|124386271\|ref\|YP_001029067.1\| cell division protein FtsB [Burkholderia mallei NCTC 10229], gi\|124... gi\|254258692, gi... - gi\|90292424\|ref\|ZP_01212037.1\| hypothetical protein Bpse17_02002966 [Burkholderia pseudomallei 1710a... gi\|167911661 - gi\|167911661\|ref\|ZP_02498752.1\| cell divison protein FtsB [Burkholderia pseudomallei 112] gi\|126220329, gi... - gi\|67737196\|ref\|ZP_00487994.1\| COG2919: Septum formation initiator [Burkholderia pseudomallei 668], ... gi\|160698734, gi... - gi\|254177695\|ref\|ZP_04884350.1\| septum formation initiator family protein [Burkholderia mallei ATCC ... gi\|100265445, gi... - gi\|87316297\|ref\|ZP_01097315.1\| COG2919: Septum formation initiator [Burkholderia mallei 2002721280],... gi\|76579988, gi\|... - gi\|76810535\|ref\|YP_334096.1\| cell division protein FtsB [Burkholderia pseudomallei 1710b], gi\|765799... gi\|254195856, gi... - gi\|67762049\|ref\|ZP_00500753.1\| COG2919: Septum formation initiator [Burkholderia pseudomallei S13], ... gi\|85067257 - gi\|85067257\|ref\|ZP_01028110.1\| COG2919: Septum formation initiator [Burkholderia mallei 10229]	123.0	[0..1]	[93..1]
gi\|78066881, gi\|... - gi\|78066881\|ref\|YP_369650.1\| cell division protein FtsB [Burkholderia sp. 383], gi\|77967626\|gb\|ABB09...	122.0	[0..1]	[93..1]
gi\|67549710, gi\|... - gi\|67549710\|ref\|ZP_00427561.1\| Septum formation initiator [Burkholderia vietnamiensis G4], gi\|675289...	121.0	[0..1]	[93..1]
gi\|83718705, gi\|... - gi\|83718705\|ref\|YP_442425.1\| cell division protein FtsB [Burkholderia thailandensis E264], gi\|836525... gi\|167619431 - gi\|167619431\|ref\|ZP_02388062.1\| cell divison protein FtsB [Burkholderia thailandensis Bt4] gi\|167581354 - gi\|167581354\|ref\|ZP_02374228.1\| cell divison protein FtsB [Burkholderia thailandensis TXDOH]	121.0	[0..1]	[93..1]
gi\|72609661, gi\|... - gi\|74017776\|ref\|ZP_00688399.1\| Septum formation initiator [Burkholderia ambifaria AMMD], gi\|72609661... gi\|170135779, gi... - gi\|170699287\|ref\|ZP_02890336.1\| Septum formation initiator [Burkholderia ambifaria IOP40-10], gi\|170...	120.0	[0..1]	[93..1]
gi\|84362207 - gi\|84362207\|ref\|ZP_00986840.1\| COG2919: Septum formation initiator [Burkholderia dolosa AUO158]	111.0	[0..11]	[93..1]
gi\|91784227, gi\|... - gi\|91784227\|ref\|YP_559433.1\| cell division protein FtsB [Burkholderia xenovorans LB400], gi\|91688181...	110.0	[0..1]	[93..1]
gi\|116183522, gi... - gi\|75854075\|ref\|ZP_00761794.1\| COG2919: Septum formation initiator [Vibrio sp. Ex25], gi\|116183522\|r... gi\|91227841, gi\|... - gi\|91227841\|ref\|ZP_01262014.1\| cell divison protein FtsB [Vibrio alginolyticus 12G01], gi\|91188351\|g...	110.0	[0..1]	[92..1]
gi\|84355109 - gi\|84355109\|ref\|ZP_00979999.1\| COG2919: Septum formation initiator [Burkholderia cenocepacia PC184]	110.0	[0..11]	[93..1]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIFVIALTL LFGWLQYTLW FGKNGVSDYY TVKDEIEVQQ QVNSKLQARN NEMFAEIDDL  60
   61 KQGLDAIEER ARHELGLVKE GETFYRIVGE ENP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.309804
Match:	PF04977.6
Description:	No description for PF04977.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits