YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|197246400, gi...
Organism:	Rattus norvegicus
Length:	68 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|197246400, gi....

Description	E-value	Query Range	Subject Range
gi\|109500066, gi... - gi\|109501036\|ref\|XP_001057376.1\| PREDICTED: similar to Protein transport protein SEC61 gamma subunit...	9.0E-34	[1..68]	[70..137]
SC61G_HARAN - Protein transport protein Sec61 subunit gamma OS=Harpagifer antarcticus GN=sec61g PE=3 SV=1	9.0E-28	[1..68]	[1..68]
SC61G_XENLA - Protein transport protein Sec61 subunit gamma OS=Xenopus laevis GN=sec61g PE=3 SV=1	2.0E-27	[1..67]	[1..67]
gi\|83001823, gi\|... - gi\|94409030\|ref\|XP_983432.1\| PREDICTED: similar to Protein transport protein SEC61 gamma subunit [Mu...	2.0E-27	[1..68]	[1..68]
SC61G_GADMO - Protein transport protein Sec61 subunit gamma OS=Gadus morhua GN=sec61g PE=3 SV=1	2.0E-27	[1..68]	[1..68]
gi\|47207489, gi\|... - gi\|47223467\|emb\|CAF97954.1\| unnamed protein product [Tetraodon nigroviridis], gi\|47207489\|emb\|CAF911...	5.0E-27	[1..68]	[1..68]
SC61G_BRABE - Protein transport protein Sec61 subunit gamma OS=Branchiostoma belcheri GN=SEC61G PE=3 SV=1 gi\|229277345, gi... - gi\|229277345\|gb\|EEN48141.1\| hypothetical protein BRAFLDRAFT_114863 [Branchiostoma floridae], gi\|2194...	9.0E-27	[1..67]	[1..67]
SC61G_CIOIN - Protein transport protein Sec61 subunit gamma OS=Ciona intestinalis GN=SEC61G PE=3 SV=1	1.0E-26	[1..67]	[1..67]
gi\|86196445, gi\|... - gi\|86196445\|gb\|EAQ71083.1\| hypothetical protein MGCH7_ch7g490 [Magnaporthe grisea 70-15], gi\|1492100...	1.0E-26	[2..65]	[3..66]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQVMQFVEP SRQFVKDSIR LVKRCTKPDR KEFQKIAMAT AIGFAIMGFI GFFVKLIHIP  60
   61 INNIIVGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	1rh5B
Description:	The structure of a protein conducting channel
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits