YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|150261077, gi...
Organism:	Yersinia pestis CA88-4125
Length:	398 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|150261077, gi....

Description	E-value	Query Range	Subject Range
gi\|16422149, gi\|... - gi\|16766874\|ref\|NP_462489.1\| putative periplasmic protein [Salmonella typhimurium LT2], gi\|16422149\|... gi\|205330812, gi... - gi\|205330812\|gb\|EDZ17576.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... lcl\|NC_016856.1_... - [gene=yhiN] [protein=hypothetical protein] [protein_id=YP_005239801.1] [location=complement(3770767....	3.0E-71	[1..398]	[1..398]
gi\|224585381, gi... - gi\|224585381\|ref\|YP_002639180.1\| hypothetical protein SPC_3658 [Salmonella enterica subsp. enterica ... gi\|62182087, gi\|... - gi\|62182087\|ref\|YP_218504.1\| hypothetical protein SC3517 [Salmonella enterica subsp. enterica serova...	5.0E-71	[1..398]	[1..398]
gi\|51598099, gi\|... - gi\|51598099\|ref\|YP_072290.1\| hypothetical protein YPTB3809 [Yersinia pseudotuberculosis IP 32953], g... gi\|152960999, gi... - gi\|153949504\|ref\|YP_001402978.1\| hypothetical protein YpsIP31758_4032 [Yersinia pseudotuberculosis I... Q664G0\|Q664G0_YERPS - Putative uncharacterized protein precursor - Yersinia pseudotuberculosis	9.0E-71	[1..398]	[1..398]
gi\|25350355, gi\|... - gi\|25350355\|pir\|\|AH0988 probable exported protein STY4215 [imported] - Salmonella enterica subsp. en... gi\|56129750, gi\|... - gi\|56415493\|ref\|YP_152568.1\| hypothetical protein SPA3445 [Salmonella enterica subsp. enterica serov... gi\|213162031 - gi\|213162031\|ref\|ZP_03347741.1\| hypothetical protein Salmoneentericaenterica_19352 [Salmonella enter... gi\|197095898, gi... - gi\|197364421\|ref\|YP_002144058.1\| hypothetical protein SSPA3217 [Salmonella enterica subsp. enterica ... gi\|29144199, gi\|... - gi\|29144199\|ref\|NP_807541.1\| hypothetical protein t3928 [Salmonella enterica subsp. enterica serovar... gi\|16762712 - gi\|16762712\|ref\|NP_458329.1\| hypothetical protein STY4215 [Salmonella enterica subsp. enterica serov... gi\|213999897 - gi\|213999897\|ref\|ZP_03410632.1\| hypothetical protein Salmonellentericaenterica_04064 [Salmonella ent... gi\|213647719 - gi\|213647719\|ref\|ZP_03377772.1\| hypothetical protein SentesTy_10807 [Salmonella enterica subsp. ente... gi\|213425062 - gi\|213425062\|ref\|ZP_03357812.1\| hypothetical protein SentesTyphi_04775 [Salmonella enterica subsp. e...	1.0E-69	[1..398]	[1..398]
gi\|108813775, gi... - gi\|108813775\|ref\|YP_649542.1\| hypothetical protein YPN_3615 [Yersinia pestis Nepal516], gi\|108777423... gi\|108809785, gi... - gi\|108809785\|ref\|YP_653701.1\| hypothetical protein YPA_3794 [Yersinia pestis Antiqua], gi\|108781698\|... gi\|89104953, gi\|... - gi\|89104953\|ref\|ZP_01177482.1\| COG2081: Predicted flavoproteins [Yersinia pestis biovar Orientalis s... gi\|165926994, gi... - gi\|165926994\|ref\|ZP_02222826.1\| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar Ori... gi\|166009684, gi... - gi\|166009684\|ref\|ZP_02230582.1\| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar Ant... gi\|21960857, gi\|... - gi\|22127734\|ref\|NP_671157.1\| hypothetical protein y3863 [Yersinia pestis KIM], gi\|21960857\|gb\|AAM874... gi\|166213477, gi... - gi\|166213477\|ref\|ZP_02239512.1\| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar Ant... gi\|45443078, gi\|... - gi\|45443078\|ref\|NP_994617.1\| hypothetical protein YP_3329 [Yersinia pestis biovar Microtus str. 9100... gi\|167400494, gi... - gi\|167400494\|ref\|ZP_02306003.1\| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar Ant... gi\|166961032, gi... - gi\|167420903\|ref\|ZP_02312656.1\| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar Ori... gi\|167426524, gi... - gi\|167426524\|ref\|ZP_02318277.1\| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar Med...	1.0E-69	[1..398]	[63..460]
gi\|170022384, gi... - gi\|170022384\|ref\|YP_001718889.1\| hypothetical protein YPK_0123 [Yersinia pseudotuberculosis YPIII], ... gi\|77631070, gi\|... - gi\|77631070\|ref\|ZP_00793656.1\| COG2081: Predicted flavoproteins [Yersinia pseudotuberculosis IP 3175...	1.0E-69	[1..398]	[63..460]
gi\|162419407, gi... - gi\|77635472\|ref\|ZP_00797556.1\| COG2081: Predicted flavoproteins [Yersinia pestis Angola], gi\|1624194...	2.0E-69	[1..398]	[63..460]
gi\|36783567, gi\|... - gi\|37524144\|ref\|NP_927488.1\| hypothetical protein plu0118 [Photorhabdus luminescens subsp. laumondii...	3.0E-69	[1..394]	[1..394]
gi\|59710693, gi\|... - gi\|59710693\|ref\|YP_203469.1\| oxidoreductase [Vibrio fischeri ES114], gi\|59478794\|gb\|AAW84581.1\| pred...	3.0E-69	[1..393]	[1..393]
gi\|90326328, gi\|... - gi\|90412753\|ref\|ZP_01220754.1\| hypothetical protein P3TCK_22635 [Photobacterium profundum 3TCK], gi\|...	2.0E-68	[2..394]	[11..403]

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Predicted Domain #1

Region A:
Residues: [1-398]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQFDVVVIG AGAAGLFCAA QAGQAGCRVL LVDNGKKAGR KILMSGGGRC NFTNIYTEPA  60
   61 AYLSQNPHFC KSALARYTQW DFIDLMNRHN IAWHEKTLGQ LFCDDSAQQV VDLLLKECEL 120
  121 GNVTVRLRSN VLSVEKSDTG FVLHINDLRV SANSLVVASG GLSMPGLGAS PFGYKLAEQF 180
  181 GLKVLPTRAA LVPFTLHKPL LDHVQTLSGV SVPAVVTAEN GVSFRESILF THRGLSGPAI 240
  241 LQLSSYWQAG EYVSINLLPD VDLAAFLNTE RQAHPNQTLK NTLAQLLPKR LVECLQTLEQ 300
  301 LPDVTLKQLN VPQQAALIAN LQQWRVQPNG TEGYRTAEVT LGGVDTQELS SKTMEAHKVP 360
  361 GLYFIGEVVD VTGWLGGYNF QWAWSSAWAC AQGLAAKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.30103
Match:	2gqfA
Description:	No description for 2gqfA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.801310714631797	bayes_pls_golite062009
oxidoreductase activity	0.540992934867798	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: