YRC Public Data Repository - Protein Structure Prediction

Protein:	RCF1_YEAS7
Organism:	Saccharomyces cerevisiae YJM789
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RCF1_YEAS7.

Description	E-value	Query Range	Subject Range
RCF1_YEAS1 - Respiratory supercomplex factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RCF... RCF1_YEAS7 - Respiratory supercomplex factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789) GN=RCF1... AIM31 - Putative protein of unknown function; GFP-fusion protein localizes to mitochondria; may interact wit... RCF1_YEAST - Respiratory supercomplex factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S... RCF1_YEAS8 - Respiratory supercomplex factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain Lalvin EC1118 /... RCF1_YEAS2 - Respiratory supercomplex factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain JAY291) GN=RCF1...	2.0E-47	[1..159]	[1..159]
ATL48_ARATH - RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=1 SV=2	1.0E-35	[12..141]	[5..110]
HGNC:29527\|Ensem... - hypoxia inducible domain family, member 1A gi\|48146887, gi\|... - gi\|7661620\|ref\|NP_054775.1\| HIG1 domain family, member 1A [Homo sapiens], pir\|\|T14766 hypothetical p... gi\|117646476 - gi\|117646476\|emb\|CAL38705.1\| hypothetical protein [synthetic construct]	2.0E-33	[4..98]	[1..93]
HIG1A_MOUSE - HIG1 domain family member 1A, mitochondrial OS=Mus musculus GN=Higd1a PE=1 SV=1	2.0E-32	[4..99]	[1..94]
gi\|10121693 - gi\|10121693\|gb\|AAG13326.1\|AF266206_1 hypoxia-inducible gene 1 [Gillichthys mirabilis]	4.0E-26	[14..101]	[4..90]
gi\|20372967, gi\|... - gi\|29603478\|dbj\|BAC67704.1\| YGHL1 [Seriola quinqueradiata], gi\|29603476\|dbj\|BAC67703.1\| YGHL1 [Serio...	7.0E-26	[18..104]	[5..92]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRMPSSFDV TERDLDDMTF GERIIYHCKK QPLVPIGCLL TTGAVILAAQ NVRLGNKWKA  60
   61 QYYFRWRVGL QAATLVALVA GSFIYGTSGK ELKAKEEQLK EKAKMREKLW IQELERREEE 120
  121 TEARRKRAEL ARMKTLENEE EIKNLEKELS DLENKLGKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits