YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153840404, gi...
Organism:	Vibrio parahaemolyticus AQ3810
Length:	73 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153840404, gi....

Description	E-value	Query Range	Subject Range
RL31_AROAE - 50S ribosomal protein L31 OS=Aromatoleum aromaticum (strain EbN1) GN=rpmE PE=3 SV=1	127.0	[0..1]	[67..1]
RL31_THIDA - 50S ribosomal protein L31 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpmE PE=3 SV=1	126.0	[0..1]	[67..1]
gi\|91187416, gi\|... - gi\|91229291\|ref\|ZP_01262908.1\| 50S ribosomal protein L31 [Vibrio alginolyticus 12G01], gi\|91187416\|g... gi\|75854325, gi\|... - gi\|75854325\|ref\|ZP_00762025.1\| COG0254: Ribosomal protein L31 [Vibrio sp. Ex25], gi\|116183924\|ref\|ZP...	126.0	[0..1]	[73..1]
RL31_VIBVU - 50S ribosomal protein L31 OS=Vibrio vulnificus (strain CMCP6) GN=rpmE PE=3 SV=1 RL31_VIBVU - 50S ribosomal protein L31 OS=Vibrio vulnificus GN=rpmE PE=3 SV=1	125.0	[0..1]	[73..1]
RL31_VIBVY - 50S ribosomal protein L31 OS=Vibrio vulnificus (strain YJ016) GN=rpmE PE=3 SV=1	125.0	[0..1]	[73..1]
RL31_PSEHT - 50S ribosomal protein L31 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rpmE PE=3 SV=1	123.0	[0..1]	[72..1]
gi\|62257737 - gi\|62257737\|gb\|AAX77735.1\| unknown protein [synthetic construct]	123.0	[0..1]	[70..40]
gi\|229509804, gi... - gi\|229509804\|ref\|ZP_04399285.1\| LSU ribosomal protein L31p [Vibrio cholerae B33], gi\|229353278\|gb\|EE... gi\|229349476, gi... - gi\|229513599\|ref\|ZP_04403063.1\| LSU ribosomal protein L31p [Vibrio cholerae TMA 21], gi\|229349476\|gb... gi\|229516928, gi... - gi\|229516928\|ref\|ZP_04406374.1\| LSU ribosomal protein L31p [Vibrio cholerae RC9], gi\|229345991\|gb\|EE... gi\|229341338, gi... - gi\|229521744\|ref\|ZP_04411162.1\| LSU ribosomal protein L31p [Vibrio cholerae TM 11079-80], gi\|2293413... gi\|229338238, gi... - gi\|229524657\|ref\|ZP_04414062.1\| LSU ribosomal protein L31p [Vibrio cholerae bv. albensis VL426], gi\|... gi\|229335028, gi... - gi\|229527396\|ref\|ZP_04416788.1\| LSU ribosomal protein L31p [Vibrio cholerae 12129(1)], gi\|229335028\|... gi\|229606779, gi... - gi\|229606779\|ref\|YP_002877427.1\| LSU ribosomal protein L31p [Vibrio cholerae MJ-1236], gi\|229369434\|... gi\|254285871, gi... - gi\|254285871\|ref\|ZP_04960833.1\| ribosomal protein L31 [Vibrio cholerae AM-19226], gi\|197752628\|ref\|Y... gi\|153829459, gi... - gi\|153829459\|ref\|ZP_01982126.1\| ribosomal protein L31 [Vibrio cholerae 623-39], gi\|148875042\|gb\|EDL7... gi\|153825158, gi... - gi\|153825158\|ref\|ZP_01977825.1\| ribosomal protein L31 [Vibrio cholerae MZO-2], gi\|149741304\|gb\|EDM55... gi\|121590917, gi... - gi\|121590917\|ref\|ZP_01678239.1\| ribosomal protein L31 [Vibrio cholerae 2740-80], gi\|121547239\|gb\|EAX... gi\|124115552, gi... - gi\|153213982\|ref\|ZP_01949175.1\| ribosomal protein L31 [Vibrio cholerae 1587], gi\|124115552\|gb\|EAY343... RL31_VIBCH - 50S ribosomal protein L31 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) G... gi\|124121052, gi... - gi\|153803419\|ref\|ZP_01958005.1\| ribosomal protein L31 [Vibrio cholerae MZO-3], gi\|124121052\|gb\|EAY39... gi\|153819956, gi... - gi\|153819956\|ref\|ZP_01972623.1\| ribosomal protein L31 [Vibrio cholerae NCTC 8457], gi\|126509500\|gb\|E... gi\|254851216, gi... - gi\|75830094\|ref\|ZP_00759379.1\| COG0254: Ribosomal protein L31 [Vibrio cholerae MO10], gi\|254851216\|r... RL31_VIBC3 - 50S ribosomal protein L31 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / ... gi\|254222285, gi... - gi\|75824021\|ref\|ZP_00753491.1\| COG0254: Ribosomal protein L31 [Vibrio cholerae RC385], gi\|254222285\|... gi\|254225410, gi... - gi\|75819864\|ref\|ZP_00749927.1\| COG0254: Ribosomal protein L31 [Vibrio cholerae V51], gi\|254225410\|re... RL31_VIBCH - 50S ribosomal protein L31 OS=Vibrio cholerae GN=rpmE PE=3 SV=1 RL31_VIBCM - 50S ribosomal protein L31 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rpmE PE=3 SV=1 gi\|229507273, gi... - gi\|229507273\|ref\|ZP_04396778.1\| LSU ribosomal protein L31p [Vibrio cholerae BX 330286], gi\|229354778...	123.0	[0..1]	[72..1]
RL31_VIBTL - 50S ribosomal protein L31 OS=Vibrio tasmaniensis (strain LGP32) GN=rpmE PE=3 SV=1 gi\|85834869, gi\|... - gi\|86147304\|ref\|ZP_01065618.1\| 50S ribosomal protein L31 [Vibrio sp. MED222], gi\|85834869\|gb\|EAQ5301...	122.0	[0..1]	[72..1]
gi\|148550162, gi... - gi\|82736115\|ref\|ZP_00898975.1\| Ribosomal protein L31 [Pseudomonas putida F1], gi\|82716758\|gb\|EAP5181... gi\|24986872, gi\|... - gi\|26991763\|ref\|NP_747188.1\| ribosomal protein L31 [Pseudomonas putida KT2440], gi\|24986872\|gb\|AAN70...	122.0	[0..1]	[72..30]

Back

Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAGIHPEYK AVNATCSCGN SFEFNSTLGK ESIHLDVCDK CHPFYTGKQR IVDTGGRVDR  60
   61 FNKRFGALSS GKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.30103
Match:	1vs6Z
Description:	No description for 1vs6Z was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.93798084434094	bayes_pls_golite062009
structural molecule activity	9.3625249805433	bayes_pls_golite062009
binding	0.865205020833206	bayes_pls_golite062009
protein binding	0.159303137691685	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: