YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149291336, gi...
Organism:	Yersinia pestis CA88-4125
Length:	340 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149291336, gi....

Description	E-value	Query Range	Subject Range
gi\|22124864, gi\|... - gi\|22124864\|ref\|NP_668287.1\| thiamine biosynthesis lipoprotein [Yersinia pestis KIM], gi\|21957695\|gb... gi\|45440549, gi\|... - gi\|45440549\|ref\|NP_992088.1\| thiamine biosynthesis lipoprotein [Yersinia pestis biovar Microtus str....	0.0	[2..340]	[22..360]
gi\|108780628, gi... - gi\|108808715\|ref\|YP_652631.1\| thiamine biosynthesis lipoprotein [Yersinia pestis Antiqua], gi\|108780... gi\|89105989 - gi\|89105989\|ref\|ZP_01178500.1\| COG1477: Membrane-associated lipoprotein involved in thiamine biosynt... gi\|77634935 - gi\|77634935\|ref\|ZP_00797026.1\| COG1477: Membrane-associated lipoprotein involved in thiamine biosynt... gi\|167467181 - gi\|167467181\|ref\|ZP_02331885.1\| thiamine biosynthesis lipoprotein [Yersinia pestis FV-1] gi\|77631866, gi\|... - gi\|77631866\|ref\|ZP_00794452.1\| COG1477: Membrane-associated lipoprotein involved in thiamine biosynt... gi\|145211816, gi... - gi\|145600120\|ref\|YP_001164196.1\| thiamine biosynthesis lipoprotein [Yersinia pestis Pestoides F], gi... gi\|169752050, gi... - gi\|170025516\|ref\|YP_001722021.1\| ApbE family lipoprotein [Yersinia pseudotuberculosis YPIII], gi\|169... gi\|108811026, gi... - gi\|108811026\|ref\|YP_646793.1\| thiamine biosynthesis lipoprotein [Yersinia pestis Nepal516], gi\|10877...	0.0	[2..340]	[21..359]
gi\|77957141 - gi\|77957141\|ref\|ZP_00821205.1\| COG1477: Membrane-associated lipoprotein involved in thiamine biosynt...	0.0	[3..338]	[26..361]
gi\|77978368, gi\|... - gi\|77978368\|ref\|ZP_00833798.1\| COG1477: Membrane-associated lipoprotein involved in thiamine biosynt...	0.0	[13..338]	[1..326]
gi\|77974380, gi\|... - gi\|77974380\|ref\|ZP_00829921.1\| COG1477: Membrane-associated lipoprotein involved in thiamine biosynt...	0.0	[9..338]	[1..330]
gi\|36784596, gi\|... - gi\|37525170\|ref\|NP_928514.1\| thiamine biosynthesis lipoprotein ApbE precursor [Photorhabdus luminesc...	0.0	[1..338]	[1..340]
gi\|77962904 - gi\|77962904\|ref\|ZP_00826719.1\| COG1477: Membrane-associated lipoprotein involved in thiamine biosynt...	0.0	[19..338]	[42..361]
gi\|54308024, gi\|... - gi\|54308024\|ref\|YP_129044.1\| putative thiamin biosynthesis lipoprotein ApbE [Photobacterium profundu...	0.0	[1..339]	[1..340]
gi\|90410927, gi\|... - gi\|90410927\|ref\|ZP_01218941.1\| Putative thiamin biosynthesis lipoprotein ApbE [Photobacterium profun...	0.0	[1..339]	[1..340]
gi\|91191523, gi\|... - gi\|91223437\|ref\|ZP_01258702.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio alginolyticus 12G01], g...	0.0	[1..338]	[1..334]

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Predicted Domain #1

Region A:
Residues: [1-340]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKYITRCLM LVIGGLLLSG CGPEQVSLEG KTMGTSYSIK YVSDSSTAAP ETLQQEIDLI  60
   61 LEEVNDQMST YRPHSELSRF NQSREVNQPF PVSAATAKVV QEAIRINRLT DGALDVTVGP 120
  121 LVNLWGFGPE GRPDTVPTED EITRRRAWVG IDKLAVDKNA LIKRVPELYV DLSSIAKGYG 180
  181 VDVVAEYLEA QNIKDYMVDI GGEVRTRGNN GENKPWRIAI EKPVAGSTQR AQEIIEPGRM 240
  241 AVATSGDYRN YFEQDGIRYS HTIDPDTGRP INHRLVSITV LDPSCMTADG LSTGLGVLGP 300
  301 ERGMALANLL GIPVLMIIKT DDGFEEQYSD AFKPYLQVKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	2o18A
Description:	No description for 2o18A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits