YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|150260700, gi...
Organism:	Yersinia pestis CA88-4125
Length:	652 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|150260700, gi....

Description	E-value	Query Range	Subject Range
gi\|238793305, gi... - gi\|77978118\|ref\|ZP_00833551.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Yersin...	0.0	[1..652]	[1..652]
gi\|238787446, gi... - gi\|77973300\|ref\|ZP_00828849.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Yersin...	0.0	[1..652]	[1..652]
gi\|89104551 - gi\|89104551\|ref\|ZP_01177091.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Yersin... gi\|77634781 - gi\|77634781\|ref\|ZP_00796875.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Yersin... gi\|45440261, gi\|... - gi\|45440261\|ref\|NP_991800.1\| acetyl-coenzyme A synthetase [Yersinia pestis biovar Microtus str. 9100...	0.0	[1..652]	[3..654]
gi\|77631257, gi\|... - gi\|77631257\|ref\|ZP_00793843.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Yersin...	0.0	[1..652]	[3..654]
ACSA_YERPS - Acetyl-coenzyme A synthetase OS=Yersinia pseudotuberculosis GN=acs PE=3 SV=1 gi\|186893666, gi... - gi\|186893666\|ref\|YP_001870778.1\| acetyl-CoA synthetase [Yersinia pseudotuberculosis PB1/+], gi\|18669... ACSA_YERP3 - Acetyl-coenzyme A synthetase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=acs P... ACSA_YERPS - Acetyl-coenzyme A synthetase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=acs PE=3 ...	0.0	[1..652]	[1..652]
gi\|21957210, gi\|... - gi\|22124425\|ref\|NP_667848.1\| acetyl-coenzyme A synthetase [Yersinia pestis KIM], gi\|21957210\|gb\|AAM8...	0.0	[1..652]	[3..654]
gi\|75514828, gi\|... - gi\|75514828\|ref\|ZP_00737057.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher... gi\|157163539, gi... - gi\|75197927\|ref\|ZP_00707997.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher...	0.0	[1..652]	[1..652]
ACSA_SALTI - Acetyl-coenzyme A synthetase OS=Salmonella typhi GN=acs PE=3 SV=1 gi\|213427241 - gi\|213427241\|ref\|ZP_03359991.1\| acetyl-CoA synthetase [Salmonella enterica subsp. enterica serovar T... gi\|213163052 - gi\|213163052\|ref\|ZP_03348762.1\| acetyl-CoA synthetase [Salmonella enterica subsp. enterica serovar T... gi\|16762956 - gi\|16762956\|ref\|NP_458573.1\| acetyl-CoA synthetase [Salmonella enterica subsp. enterica serovar Typh... ACSA_SALTI - Acetyl-coenzyme A synthetase OS=Salmonella typhi GN=acs PE=3 SV=1 gi\|29144443, gi\|... - gi\|29144443\|ref\|NP_807785.1\| acetyl-CoA synthetase [Salmonella enterica subsp. enterica serovar Typh... gi\|214002545 - gi\|214002545\|ref\|ZP_03413280.1\| acetyl-CoA synthetase [Salmonella enterica subsp. enterica serovar T... gi\|213852760 - gi\|213852760\|ref\|ZP_03382292.1\| acetyl-CoA synthetase [Salmonella enterica subsp. enterica serovar T...	0.0	[1..652]	[1..652]
gi\|254164004, gi... - gi\|254164004\|ref\|YP_003047112.1\| acetyl-coenzyme A synthetase [Escherichia coli B str. REL606], gi\|2... gi\|83587193, gi\|... - gi\|83587193\|ref\|ZP_00925822.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher... gi\|157159006, gi... - gi\|75188792\|ref\|ZP_00702059.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher... gi\|194426861, gi... - gi\|75211996\|ref\|ZP_00712051.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher... gi\|75238604, gi\|... - gi\|75238604\|ref\|ZP_00722593.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher... gi\|75258987, gi\|... - gi\|75258987\|ref\|ZP_00730355.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher... EG11448 - acetyl-CoA synthetase / Acetyl CoA synthase, acetate-scavenging enzyme, improves carbon starvation s... gi\|85676821, gi\|... - gi\|89110790\|ref\|AP_004570.1\| bifunctional acetyl-CoA synthetase and propionyl-CoA synthetase [Escher... EG11448 - acetyl-CoA synthetase / Acetyl CoA synthase, acetate-scavenging enzyme, improves carbon starvation s... ACSA_ECOLI - Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA ligase) (Acyl-activating enzyme) - Escherich... gi\|218697778, gi... - gi\|218697778\|ref\|YP_002405445.1\| acetyl-CoA synthetase [Escherichia coli 55989], gi\|218354510\|emb\|CA... gi\|218556627, gi... - gi\|218556627\|ref\|YP_002389541.1\| acetyl-CoA synthetase [Escherichia coli IAI1], gi\|218363396\|emb\|CAR... gi\|169756860, gi... - gi\|170021932\|ref\|YP_001726886.1\| acetyl-CoA synthetase [Escherichia coli ATCC 8739], gi\|169756860\|gb... gi\|238903178, gi... - gi\|238903178\|ref\|YP_002928974.1\| acetyl-CoA synthetase [Escherichia coli BW2952], gi\|238859913\|gb\|AC... gi\|251787323, gi... - gi\|251787323\|ref\|YP_003001627.1\| hypothetical protein B21_03901 [Escherichia coli BL21], gi\|24237959... gi\|124527708, gi... - gi\|124527708\|ref\|ZP_01699143.1\| acetate--CoA ligase [Escherichia coli B], gi\|124501151\|gb\|EAY48617.1... gi\|209921555, gi... - gi\|209921555\|ref\|YP_002295639.1\| acetyl-CoA synthetase [Escherichia coli SE11], gi\|209914814\|dbj\|BAG... gi\|254290754, gi... - gi\|254290754\|ref\|YP_003056502.1\| acetyl-coenzyme A synthetase [Escherichia coli BL21(DE3)], gi\|25398... gi\|170083524, gi... - gi\|170083524\|ref\|YP_001732844.1\| acetyl-CoA synthetase [Escherichia coli str. K-12 substr. DH10B], g... gi\|226840180, gi... - gi\|254037074\|ref\|ZP_04871151.1\| acetyl-coenzyme A synthetase [Escherichia sp. 1_1_43], gi\|226840180\|...	0.0	[1..652]	[1..652]
gi\|73858039, gi\|... - gi\|74314562\|ref\|YP_312981.1\| acetyl-CoA synthetase [Shigella sonnei Ss046], gi\|73858039\|gb\|AAZ90746....	0.0	[1..652]	[1..652]

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Predicted Domain #1

Region A:
Residues: [1-652]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQIHKHPIP AAIAEHALIT PEKYQHYYQQ SVQNPDEFWG EQGKIIDWIK PYKTVKNTSF  60
   61 DPGHVSIRWF EDGTLNLAAN CLDRHLAERG DQTAIIWEGD DPNQSKTVTY KQLHHDVCQF 120
  121 ANVLKSLGVK KGDVVAIYMP MVPEAAVAML ACARIGAVHS VIFGGFSPDA VAGRIIDSHS 180
  181 KLVITADEGI RAGRAIPLKK NVDEALKNPA ITSIKNVVVF QRTGNASYWE DGRDVWWHDL 240
  241 IKEASADCPP EEMNAEDPLF ILYTSGSTGK PKGVVHTTGG YLVYAALTFK YVFDYHPGDI 300
  301 YWCTADVGWV TGHSYLLYGP LACGAITLMF EGVPNYPGVN RLSQVVDKHK VNILYTAPTA 360
  361 IRALMAEGDK AIEGTKRDSL RIMGSVGEPI NPEAWEWYYN KIGNSKCPIV DTWWQTETGG 420
  421 FMITPLPGAT ELKAGSATRP FFGVQPALVD NLGNPQEGVA EGNLVITDSW PGQARTLFGD 480
  481 HERFEQTYFS TFKGMYFSGD GARRDEDGYY WITGRVDDVL NVSGHRLGTA EIESALVAHP 540
  541 KIAEAAVVGV PHNIKGQAIY AYITLNHGEE PTPELYTEVR NWVRKEIGPL ATPDILHWTD 600
  601 SLPKTRSGKI MRRILRKIAT GDTSNLGDTS TLADPSVVEK LLEEKQSMQT PS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	175.0
Match:	2p2fA
Description:	No description for 2p2fA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits